KEGG   Serratia marcescens WW4: SMWW4_v1c20420
Entry
SMWW4_v1c20420    CDS       T02448                                 
Symbol
ycfD
Name
(GenBank) cupin superfamily protein
  KO
K18850  50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
Organism
smw  Serratia marcescens WW4
Brite
KEGG Orthology (KO) [BR:smw00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:smw03009]
    SMWW4_v1c20420 (ycfD)
Enzymes [BR:smw01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.47  [50S ribosomal protein L16]-arginine 3-hydroxylase
     SMWW4_v1c20420 (ycfD)
Ribosome biogenesis [BR:smw03009]
 Prokaryotic type
  ribosomal protein modification factors
   SMWW4_v1c20420 (ycfD)
SSDB
Motif
Pfam: JmjC_2 WHD_ROXA Cupin_1 Cupin_2 AraC_binding
Other DBs
NCBI-ProteinID: AGE17843
LinkDB
Position
complement(2219358..2220479)
AA seq 373 aa
MDYQLDLDWNDFLQRYWQKRPVILKRGFKNFIDPISPDELAGLAMENEVDSRLVSHQDGR
WQVAHGPFESFDHLSENNWSLLVQAVDHWHEPSAALMRPFRQLPDWRMDDLMISFSVPGG
GVGPHLDQYDVFIIQGTGRRRWRVGEKTPLKQHCPHPDLLQVEPFDAIIDEEMEPGDILY
IPPGFPHEGYALENALNYSVGFRAPNGRELVSGFADYVLARELGSKRYGDPDVKLREHPA
EILPQEVDALRQMMLDLVQQPEHFQHWFGEFISQSRHELDLAPPEPPYQAGEIYELLQQG
EALQRLGGLRVLRIGDRCFVNGELIDTDQLQAADALCQHFSVDAALLGDAVDDPSFLALL
TALVNSGYWYFND
NT seq 1122 nt   +upstreamnt  +downstreamnt
atggattatcaattagatctggactggaacgattttttgcaacgttattggcaaaagcgt
ccggtgattctgaagcgcggcttcaaaaactttatcgatccgatctccccggatgagctg
gccgggctggcgatggaaaacgaagtggacagccgcctggtcagccaccaggacggccgt
tggcaggttgcgcacggccccttcgagagcttcgaccacctgagcgaaaacaactggtcg
ctgctggtgcaggcagtggaccactggcatgagccttccgccgcgctgatgcgcccgttc
cgccaactgccggactggcggatggatgacctgatgatctccttctcggtgccgggcggc
ggcgtcggcccgcacctcgatcagtacgacgtgttcatcattcagggcactggccgccgc
cgctggcgcgtcggggaaaaaacgccgctgaaacagcactgcccgcacccggatctgctg
caggtcgaaccgttcgacgccatcatcgacgaagagatggagccgggcgacattctctat
attccgccgggcttcccgcatgaaggctacgcgctggaaaacgcgctcaactactcggtg
ggcttccgcgcgccgaacggccgcgagctggtgagcggcttcgccgactacgtgctggcg
cgcgagctcggcagcaagcgctacggcgatccggacgttaaactgcgcgaacacccggcg
gagatcctgccgcaggaagtggacgccttacggcagatgatgctggatctggtgcaacag
ccggaacacttccagcactggttcggcgagtttatctcccaatcgcgccacgagctggat
ctggcgccgccggagccgccgtatcaggccggggaaatctacgaactgctgcaacagggt
gaagcgctgcagcgcctgggcggattgcgcgtgctgcgcatcggcgatcgctgcttcgtc
aacggtgaactgatcgacaccgaccagttgcaggccgcagacgccctgtgccagcacttc
agcgtcgatgccgccctgctcggcgacgcggtggacgatccgtcgttcctggcgctgctg
accgcgctggtcaacagcggctattggtactttaacgactga

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