Stackebrandtia nassauensis: Snas_2365
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Entry
Snas_2365 CDS
T01194
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sna
Stackebrandtia nassauensis
Pathway
sna03030
DNA replication
sna03410
Base excision repair
sna03420
Nucleotide excision repair
sna03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Snas_2365
03410 Base excision repair
Snas_2365
03420 Nucleotide excision repair
Snas_2365
03430 Mismatch repair
Snas_2365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sna03032
]
Snas_2365
03400 DNA repair and recombination proteins [BR:
sna03400
]
Snas_2365
Enzymes [BR:
sna01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Snas_2365
DNA replication proteins [BR:
sna03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Snas_2365
DNA repair and recombination proteins [BR:
sna03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Snas_2365
NER (nucleotide excision repair)
GGR (global genome repair) factors
Snas_2365
MMR (mismatch excision repair)
DNA ligase
Snas_2365
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Snas_2365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
Motif
Other DBs
NCBI-ProteinID:
ADD42050
UniProt:
D3Q3K9
LinkDB
All DBs
Position
2505039..2507288
Genome browser
AA seq
749 aa
AA seq
DB search
MSSRVTAAEQVPDDFDAARERHTKLAAEIDRHRQLYHRDDAPQISDAEYDALMRELLAIE
EAHPVLATQDSPSQQVGGDVSELFASVRHAERLYSLDNAFSPEELTAWVERVTAEVPGEA
YLCELKIDGLAVNLTYENGVLVRGATRGDGTTGEDITPNVRTIASIPEKLKGTKKYPVPE
FVEIRGEVFMSTESFEKLNADRLAENERITAANEERKAEGKRLQKLLPLYANPRNAAAGS
LRQKDPTITASRALSMTVYGFGARRGFEPTHQSQGYAALKAWGLPTSSYFKVLDTVEGVT
EYIEHYGEHRHDIEHEIDGVVIKIDDIAVQRRLGSTTRAPRWAIAYKYPPEEVTTTLRDI
KVSVGRTGRATPYAVLEPVRVAGSEVEFATLHNQDIVKAKGVLIGDRVIIRKAGDVIPEV
LGPVEGARTGDEHEFVMPSNCPECGTELRQMSEGDIDLRCPNARSCPAQLRERLSYLTGR
SCLDIDGLGYVACTALVQPLEPKQPPLADEGDLFNLTMEQLLPIKSLVLDPDSGLPKKDP
KTGKDKEVTYFATQDGAPKAGATKMLEGIEAAKQQELWRIINGLSIRHVGPVAARALATE
FGDLDAIRDADEERLAAVDGVGPTIATAVKQWFAEDWHVEILEKWRAAGVRFVEERPEAG
ERHLAGLTVVITGSLEGWTRDGAAEAVRVRGGKVSGSVSKKTSFVVVGDSPGSKYDKAVK
LGVPILDTEGFATLLSEGPDAVRPIEADG
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgagttcccgcgtcaccgcagctgagcaggttcccgacgacttcgacgccgcccgcgag
cggcacacgaaactggccgccgagatcgacaggcaccggcagctgtaccaccgtgacgac
gccccgcagatctccgacgccgagtacgacgccctcatgcgcgagctgctggccatcgag
gaggcgcaccccgtcctggccacccaggactcgcccagccagcaggtcggcggcgacgtg
tcggaactgttcgcctcggtgcggcacgccgagcggctgtacagcctcgacaacgccttc
tcgcccgaggaactgaccgcctgggtcgagcgggtcaccgccgaggtccccggtgaggcg
tacctgtgcgagctcaagatcgacggcctcgcggtcaacctgacctacgagaacggcgtc
ctggtgcgcggcgccacccgcggcgacggcaccaccggcgaggacatcacgcccaacgtc
cgcaccatcgcctcgatcccggagaaactcaagggcaccaagaagtacccggtaccggag
ttcgtcgagatccgcggcgaggtcttcatgtccaccgagtccttcgagaagctcaacgcc
gaccggctcgccgagaacgagcggatcaccgccgccaacgaggaacgcaaggccgagggc
aagcggcttcagaaactgctgccgctgtacgccaacccgcgcaacgccgccgccggttcg
ctgcgccagaaggacccgacgatcaccgccagccgggcgctgagcatgaccgtttacggc
ttcggcgcccgccgcggtttcgaacccacccaccagtcgcagggctacgccgcgctgaag
gcctggggcctgccgaccagctcgtacttcaaggtgctcgacaccgtcgagggcgtcacg
gagtacatcgagcactacggcgagcaccggcacgacatcgagcacgagatcgacggcgtc
gtcatcaagatcgacgacatcgcggtgcaacgccgtctcggctccaccacccgggcgccg
cgctgggccatcgcctacaagtacccgcccgaagaggtcaccacgacgctgcgcgacatc
aaggtcagcgtcggccgcaccggccgcgccaccccgtacgcggtcctggaaccggtgcgg
gtggccggttccgaggtcgagttcgccaccctgcacaaccaggacatcgtcaaggccaag
ggcgtgctcatcggcgaccgggtgatcattcgcaaggccggggacgtgatcccggaggtg
ctcggcccggtcgagggcgcccgcaccggcgacgagcacgagttcgtcatgccctcgaac
tgccccgaatgcggcaccgaactgcgacagatgtccgaaggggacatcgacctgcgctgc
cccaacgcccgttcctgcccggcgcagctgcgagagcggctgtcgtacctcaccggacgg
tcgtgtctggacatcgacggtctcggctacgtcgcctgcaccgcgctggtgcagccgctg
gaacccaagcagccgccgctggccgacgagggcgacctgttcaacctgaccatggaacag
ctgctgccgatcaagtcgctggtcctcgaccccgacagcggactgcccaagaaggacccc
aagaccggcaaggacaaggaggtcacctacttcgccacccaggacggcgcccccaaggcc
ggtgccaccaagatgctggagggcatcgaggccgccaaacagcaggaactgtggcgcatc
atcaacggcctgtcgatccggcacgtcggaccggtcgcggcccgggcgctggccaccgag
ttcggtgacctggacgcgatccgcgatgccgacgaggagcggctggccgctgtggacggc
gtcggcccgaccatcgccaccgccgtcaagcagtggttcgccgaggactggcacgtcgag
atcctggagaagtggcgcgccgccggcgtccgcttcgtcgaggagcgcccggaggcgggg
gagcggcacctggccgggctcaccgtcgtcatcaccggttcgctggagggctggacccgt
gacggcgccgccgaagcggtgcgagtgcggggcggtaaggtgtcggggtcggtgtcgaag
aagacgtccttcgtggtcgtcggagattcgcccgggtccaaatacgacaaagccgtcaaa
ctgggcgtgccgatattggacaccgagggcttcgcgaccctgttgtccgagggtccggat
gcggtgcggcccatcgaggctgatgggtag
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