Streptomonospora nanhaiensis: OUQ99_26565
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Entry
OUQ99_26565 CDS
T08686
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
snah
Streptomonospora nanhaiensis
Pathway
snah03030
DNA replication
snah03410
Base excision repair
snah03420
Nucleotide excision repair
snah03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
snah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OUQ99_26565 (ligA)
03410 Base excision repair
OUQ99_26565 (ligA)
03420 Nucleotide excision repair
OUQ99_26565 (ligA)
03430 Mismatch repair
OUQ99_26565 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
snah03032
]
OUQ99_26565 (ligA)
03400 DNA repair and recombination proteins [BR:
snah03400
]
OUQ99_26565 (ligA)
Enzymes [BR:
snah01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OUQ99_26565 (ligA)
DNA replication proteins [BR:
snah03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OUQ99_26565 (ligA)
DNA repair and recombination proteins [BR:
snah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OUQ99_26565 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OUQ99_26565 (ligA)
MMR (mismatch excision repair)
DNA ligase
OUQ99_26565 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OUQ99_26565 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
Nlig-Ia
HHH_8
Motif
Other DBs
NCBI-ProteinID:
WAE72708
UniProt:
A0ABY6YKG1
LinkDB
All DBs
Position
complement(6172951..6175203)
Genome browser
AA seq
750 aa
AA seq
DB search
MSALDNTTDIPDEVRARHEELCRELDDHSYRYYLGNPIISDAEYDTLMGELRGIEDRYPV
LATQDSPTQKVGAPISVDFAEVEHLVRMESLGNAFDTGELNAWGERSAAEVPVGAYLCEL
KIDGLAVDLVYEKGRLVRAATRGDGRVGEDITLNVRTIGVVPERLREDVRPAPELLEVRG
EVFLPVEDFEALNKRITETGEHAPFANPRNAAAGSLRQKDPRVTATRPLSMIVHGVGAYV
PAGGGKDVAFTSQSQAYALLGEWGLPLSDRYKVVGTMEEVREYVAYYAAHRHEPAYEIDG
IVVKVDDFALQRRLGSTSRAPRWAIAYKYPPEEVTTRLVDIKVGVGRTGRVTPYGVMEPV
VVAGSEVEFATLHNSQEVARKGVRIGDTVVLRKAGDVIPEIVGPVLERRDGSEREFVMPE
RCPECDTPLGQQKEGDVDLRCPNARSCPGQLRERVAFIASRKALDIEALGYVAATALTQP
LEPAQAPLRDEGDLFDLTVDQLLPIRTHVLDPDTTEPKTDPKTGDPKVVSFFANLRGEPK
KTVEKLFEQLEEAKAKPLWRVLVALSIRHVGPRAAEDLARHFRSMDAIRGATEEELASVD
GVGPTIAASIREWFSVDWHTEIVRKWAEAGVRMEDDEPEFGSRFLEGVTVVVTGSLEGFT
RDGAKEAIAERGGRATASVSKKTGFVVVGDSPGSKYDKAVKLGVPVLDEQGFRVLLDEGA
DAAVGVRINRSPEDGAADAAEAPAAEGADA
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgcgctcgacaacaccaccgacatccccgacgaggtacgcgcccgccacgaggag
ctgtgccgggagctggacgaccacagctaccgctactacctgggcaacccgatcatctcc
gacgccgagtacgacaccctcatgggcgagctgcgcggcatcgaggaccggtaccccgtc
ctcgccacgcaggactcgcccacccagaaggtcggcgcccccatcagcgtcgacttcgcc
gaggtcgagcacctggtgcggatggagagcctgggcaacgcgttcgacaccggggagctc
aacgcctggggcgagcgctccgcggccgaggtcccggtcggcgcctacctctgcgagctc
aagatcgacggcctcgcggtcgacctggtctacgagaagggccgcctcgtgcgcgccgcc
acccgcggcgacggccgcgtgggcgaggacatcaccctcaacgtccgcaccatcggggtc
gtccccgagcggctgcgcgaggacgtgcgccccgcacccgagctgctggaggtgcgcgga
gaggtcttcctccccgtggaggacttcgaggccctcaacaagcgcatcaccgagaccggc
gagcacgcccccttcgccaacccccgcaacgccgccgccggctcgctgcgccagaaggac
ccccgggtcaccgcgacccgccccctgtcgatgatcgtgcacggggtgggcgcgtacgtc
cccgcgggcggcgggaaggacgtcgccttcaccagccagtcgcaggcctacgccctgctg
ggggagtggggcctgccgctgagcgaccgctacaaggtcgtggggaccatggaggaggtc
cgcgagtacgtcgcgtactacgcggcgcaccgccacgagcccgcctacgagatcgacggc
atcgtcgtcaaggtcgacgacttcgcgctccagcgcaggctcggctccacgagccgcgcc
ccgcgctgggcgatcgcctacaagtacccgccggaggaggtcaccacccggctcgtcgac
atcaaggtgggcgtgggccggaccgggcgcgtcaccccgtacggcgtcatggagccggtg
gtcgtggccgggtccgaggtcgagttcgccaccctgcacaactcccaggaggtcgcccgc
aagggcgtgcgcatcggcgacaccgtggtgctgcgcaaggcgggcgacgtcatccccgag
atcgtcggccccgtcctggagcgccgcgacggcagcgagcgcgagttcgtcatgcccgag
cgctgccccgagtgcgacaccccgctcggccagcagaaggagggcgacgtcgacctgcgg
tgccccaacgcccgctcctgccccggacagctccgggagcgggtcgccttcatcgccagc
cgcaaggccctggacatcgaggcgctcggctacgtggcggccaccgccctgacccagccg
ctggagcccgcacaggccccgctgcgggacgagggggacctgttcgacctgaccgtcgac
cagctgctgcccattcgcacccacgtgctcgacccggacaccaccgagcccaagaccgac
ccgaagaccggcgaccccaaggtggtgtccttcttcgccaacctcaggggcgagcccaag
aagacggtcgagaagctgttcgagcagctggaggaggccaaggccaaaccgctgtggcgg
gtcctcgtggcactgtcgatccggcacgtcggcccgcgcgcggccgaggacctggcccgc
cacttccgttccatggacgccatccgcggggccaccgaggaggagctggcctcggtcgac
ggcgtcggcccgaccatcgccgcgtcgatccgcgagtggttctccgtggactggcacacc
gagatcgtccgcaagtgggcggaggcgggcgtgcgcatggaggacgacgagccggagttc
ggctcgcgcttcctcgagggcgtcaccgtcgtggtgaccggctccctggaggggttcacg
cgcgacggcgccaaggaggcgatcgccgagcgcggcggccgtgcgaccgcgtcggtgtcc
aagaagaccggtttcgtggtggtgggggacagccccgggtccaagtacgacaaggccgtc
aagctgggtgtgcccgtgctggacgagcaggggttccgggtgctgctggacgagggcgcc
gacgccgccgtcggcgtgcggatcaaccgctcgccggaggacggcgccgccgacgcggcg
gaggcccccgccgcggagggggccgacgcctag
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