Sphingomonas naphthae: PQ455_02440
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Entry
PQ455_02440 CDS
T08850
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
snap
Sphingomonas naphthae
Pathway
snap03030
DNA replication
snap03410
Base excision repair
snap03420
Nucleotide excision repair
snap03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
snap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PQ455_02440 (ligA)
03410 Base excision repair
PQ455_02440 (ligA)
03420 Nucleotide excision repair
PQ455_02440 (ligA)
03430 Mismatch repair
PQ455_02440 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
snap03032
]
PQ455_02440 (ligA)
03400 DNA repair and recombination proteins [BR:
snap03400
]
PQ455_02440 (ligA)
Enzymes [BR:
snap01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PQ455_02440 (ligA)
DNA replication proteins [BR:
snap03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PQ455_02440 (ligA)
DNA repair and recombination proteins [BR:
snap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PQ455_02440 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PQ455_02440 (ligA)
MMR (mismatch excision repair)
DNA ligase
PQ455_02440 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PQ455_02440 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
VCPO_N
5_3_exonuc
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
WCT74110
LinkDB
All DBs
Position
493253..495352
Genome browser
AA seq
699 aa
AA seq
DB search
MDEKQAEARLAVLAAEIAHHNRLYHDRDEPEISDAAYDALVRENTALEADFPHLVRADSP
STQVGAATTSRLAKVAHARAMMSLDNAFADEEVAEFVARVRRFLLLDEAEPVALTAEPKI
DGLSCSIRYEGGRLVQALTRGDGQTGEDVTPNVRTIRDVPEQLTGDVPPVFEVRGEVYMA
KADFAALNARQAERGGKIFANPRNAAAGSLRQLDPTITEARPLRFLAHGWGEASVVPAET
QLGVMQAIGGWGLPISDRLIRVDTIEAALAHYRGIEAARADLPFDIDGVVYKVDRLDWQR
RLGQVARAPRWAIAHKFPAERAQTTLERIDIQVGRTGKLTPVARLEPVTVGGVVVSNATL
HNADEIGRLGVHPGDRVVIQRAGDVIPQIVENLSREETREPWPFPQTCPECGSAAEREPG
EVDYRCTGGLVCPAQRVERLRHFVSRHALDIEGLGLVHIEAFFRDGLIANPADIFRLHEK
RDLLLGRERWAETSVDNLLKAIEEKRSPPLDRLLFGLGIRHVGEVTARDLARRYGSWEAL
AAMLGEAVAARDAMVPAVGETDEKFLARTAKELAAIVATPNIGGEVALALVDFFAEAHNR
EVLDDLTAQVAIQPVVFETRESPVTGKIVVFTGKLETMSRDEAKAQAEALGAKTAGSVSK
KTDLVVAGPGAGSKLTQAAALGIEVIDEAGWARLVAEAG
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggacgagaaacaggcggaggcgcggctggccgtgctggcggcggagatcgcgcaccac
aatcggctctatcacgatcgggacgagcccgagatcagcgacgccgcctatgacgcgctc
gtccgcgagaatacggcgctggaggcggatttcccgcatctggtgcgcgccgacagcccc
tcgacacaggtgggggcggccaccacctcgcggctcgccaaggtggcgcacgcgcgggcg
atgatgagcctcgacaatgccttcgccgacgaggaggtggccgaattcgtcgcccgcgtg
cggcgtttcctgctgctggacgaggcggagccggtcgcgctcaccgccgagcccaagatc
gacggcctctcctgctcgatccgctacgagggcggccggctggtgcaggcgctgacccgc
ggcgacggccagaccggcgaggacgtcacccccaacgtccgcaccatccgcgacgtgccc
gagcaactgacgggcgacgtgccgcccgtgttcgaggtgcgcggcgaggtctatatggcc
aaggccgatttcgcggcgctcaacgcgcggcaggccgagcgcggcggcaagatcttcgcc
aacccgcgcaacgccgccgccggatcgctgcgtcagctcgatccgacgatcaccgaggcg
cggccgctgcgcttcctggcgcacggctggggcgaggcgtcggtggtgccggccgagacg
cagctgggcgtgatgcaggcgatcggggggtggggcctgcccatctccgatcgcctgatc
cgcgtcgatacgatcgaggcggcgctggcgcattatcgcggcatcgaggcggcgcgggcc
gatctgccgttcgatatcgatggcgtcgtctacaaggtggaccggctcgattggcagcgg
cggctggggcaggtggcgcgcgcgccgcgctgggcgatcgcccacaaattccccgccgaa
cgcgcgcagacgaccctggagcggatcgacatccaggtcggccgcaccggcaagctcacc
cccgtggcgcggctggagccggtgacggtgggcggcgtggtcgtctccaacgcgaccctg
cacaatgccgacgagatcgggcgcctcggcgtccatcccggcgaccgggtggtgatccag
cgcgccggcgacgtgatcccccagatcgtcgagaatctcagccgcgaggagacgcgcgag
ccctggcccttcccgcagacatgccccgaatgtggctccgccgccgagcgcgagccggga
gaggtggattatcgttgcaccggcgggctggtctgccccgcgcagcgggtcgagcggctc
cgccatttcgtgtcgcgccacgcgctcgatatcgaggggctcggcctcgtccatatcgag
gcgttcttccgcgacgggctcatcgccaacccggccgatatcttccgcctgcacgagaag
cgcgacctgcttctggggcgcgagcgctgggccgaaacgtcggtcgacaatctgctgaag
gcgatcgaggagaagcgcagcccgccgctcgaccggctgctgttcggcctgggcatccgc
cacgtcggcgaggtgaccgcgcgcgatctcgcgcggcgttatggaagctgggaggcgctg
gccgcgatgctgggcgaggcggtcgcggcgcgggatgccatggtgccggccgtgggcgag
accgacgagaaattcctcgcccgcactgccaaggagttggccgcgatcgtcgccaccccc
aatattggcggcgaggtggcgctggcgctggtcgatttcttcgccgaggcgcacaatcgc
gaggtgctggatgatctgaccgcgcaggtcgcgatccagcccgtcgtgttcgagacgcgc
gagagcccggttaccggcaagattgtggtgttcaccggcaagctggaaacgatgagccgc
gacgaggccaaggcgcaagccgaggcgctgggcgccaagacggcgggatcggtctccaag
aagaccgatctggtggtggcggggccgggcgccggatcgaagctgacgcaggcggccgcg
ctggggatcgaggtgatcgacgaggcgggctgggccagactggtggccgaggcggggtga
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integrated database retrieval system
