Sneathiella marina: NBZ79_14560
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Entry
NBZ79_14560 CDS
T08200
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
snea
Sneathiella marina
Pathway
snea03030
DNA replication
snea03410
Base excision repair
snea03420
Nucleotide excision repair
snea03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
snea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NBZ79_14560 (ligA)
03410 Base excision repair
NBZ79_14560 (ligA)
03420 Nucleotide excision repair
NBZ79_14560 (ligA)
03430 Mismatch repair
NBZ79_14560 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
snea03032
]
NBZ79_14560 (ligA)
03400 DNA repair and recombination proteins [BR:
snea03400
]
NBZ79_14560 (ligA)
Enzymes [BR:
snea01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NBZ79_14560 (ligA)
DNA replication proteins [BR:
snea03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NBZ79_14560 (ligA)
DNA repair and recombination proteins [BR:
snea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NBZ79_14560 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NBZ79_14560 (ligA)
MMR (mismatch excision repair)
DNA ligase
NBZ79_14560 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NBZ79_14560 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
DUF4796_N
HHH
FdhE_central
Motif
Other DBs
NCBI-ProteinID:
USG60391
LinkDB
All DBs
Position
complement(3011346..3013457)
Genome browser
AA seq
703 aa
AA seq
DB search
MENTTKLKADTAAIEHKRLALEIRGHDTRYYQDDDPLVSDADYDQLRRELIALEKRFPFL
ITPDSPTQSVGSAPAKGFGKVRHKVPMLSLDNAFNSEELQEFENRVRRFLGLSADEEVAF
FAEPKIDGLSASLRYEDGNFVQGATRGDGQEGEDITENLKGVVDLPLRLKGSGEKIPSVF
EVRGEVYMSGADFQTLNEAQLAANAKTFANPRNAAAGSLRQLDTSITASRNLRLFAYAWG
DTSEIPGKSQSEVLEQFATWGFSVNPLSHVCANMAEAIDSYRKIEELRASLDYDIDGVVF
KVNRLDWQARLGFVSRSPRWAIAHKFPAEKASTVIQDIEIQVGRTGALTPVARLRPVTVG
GVVVSNATLHNEEEIERKDIRVDDTVIVQRAGDVIPQVVEVNLDKRQENSIAFNFPTICP
VCGSHAVREINATTGKADVIRRCTGGLICRAQAVERLKHFVSRNALDIDGLGAKQIEAFY
ADEIIKSPADIFTLENRDNAPGNLKRLKNREGFGDKAIKNLFAAINERRQIDLDRFIYAL
GIRHIGQGNARLLARSYLTFAALRSALDTTREDAGERYVELLNIDGIGEAVADAVREFFN
EKKNQGILDELLEEVEILEFEVPTNDSPIAGKTVVFTGSLELMTRAEMKARAEGLGAKVS
GSISAKTDYLVAGEKAGSKLKKAADLGVQILSEQEWIDLMGAS
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatacgacgaaactgaaggccgatacagcagcaatagagcataagcggttggca
cttgaaatcagggggcatgatacccggtattatcaggatgatgatccacttgtttctgat
gccgattatgatcagttgagacgcgaattaatcgcgttggaaaagagatttccatttttg
attacacccgacagtcccacgcaaagcgtcggcagcgcaccggcaaaaggatttgggaaa
gtacggcataaagtaccgatgctatctttggacaatgcgttcaatagtgaagaattacag
gaatttgaaaatcgggtacggcggtttttggggttatccgctgatgaagaggtggccttt
ttcgcggaacctaaaattgacggattgtcggccagtcttcgatatgaagatggaaatttt
gttcaaggtgcaacacggggagatggtcaggaaggggaagatatcactgaaaacctgaaa
ggggttgttgatcttcctttgcgtttaaagggttcaggtgagaagataccttctgtattt
gaggtgcgcggcgaggtttatatgtccggcgctgattttcaaaccctcaatgaggcgcag
ttggcggcgaatgcgaaaacctttgcgaaccccagaaatgccgccgccggcagtttgcgg
cagttggatacctcgataacggcttctcgaaatcttcgtctatttgcctatgcatggggg
gacacttctgaaattccaggtaaatcgcagtcagaagttctcgaacagttcgccacttgg
ggcttttctgtcaacccgctctctcatgtctgcgccaatatggcagaggcaatagactcc
tatcgtaaaattgaggagttacgggcgtcgcttgactatgacattgatggcgttgtcttc
aaagtaaaccgccttgattggcaagcccgtctcggctttgttagccgcagtccgcgctgg
gccattgctcataaatttccagcggaaaaggcaagtaccgtaattcaagatattgaaatc
caagtcgggcgcactggtgccctaacgccggttgcaagattacgccctgtgaccgtgggc
ggggtcgttgtatccaatgcgaccttacataacgaagaggaaatcgagcgtaaggacatt
cgtgttgatgacaccgttatcgtccagcgtgccggcgatgttattccacaagttgtagag
gtcaatctggataagcggcaggaaaacagtatagcttttaattttccgacaatttgccca
gtctgcggtagccatgcggttagagagataaacgcgacaactggtaaggccgatgtgatt
aggcgatgcaccggtggcttaatctgccgtgcccaagcagtggaacgtttgaagcatttc
gtttcacgtaatgcactggacatcgatggattgggtgccaaacagatcgaagccttttat
gctgatgaaattattaagtctcccgccgatatttttactcttgaaaatcgcgataatgcg
ccaggcaatctgaaacgacttaaaaatagagaaggttttggtgataaagccatcaaaaac
ctattcgcagccattaatgaacggcggcaaatcgatttggatcggtttatttatgcgctg
ggtatccggcatattggtcaggggaatgcgcgtctgcttgctcgcagctacctgactttt
gcggcgctgaggagcgccctcgacacaactcgagaggatgctggcgagcgatatgttgaa
ttattgaatattgatggtatcggagaagccgttgctgacgccgtccgagagtttttcaac
gagaaaaaaaatcagggtattctggatgaacttctggaagaagtagaaatattggaattt
gaagttccgacgaatgatagtccaatagccggaaagactgttgtctttaccggttccctg
gaattgatgacgcgcgctgaaatgaaggcccgtgcagaaggacttggggccaaagtcagc
ggatccatttctgcaaagactgactatctggtcgctggcgagaaggcagggtccaaactc
aaaaaggcagcagatctgggtgttcagattttatctgaacaggagtggattgacttgatg
ggtgcgtcctaa
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