Simkania negevensis: SNE_A07200
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Entry
SNE_A07200 CDS
T01559
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sng
Simkania negevensis
Pathway
sng03030
DNA replication
sng03410
Base excision repair
sng03420
Nucleotide excision repair
sng03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sng00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SNE_A07200 (ligA)
03410 Base excision repair
SNE_A07200 (ligA)
03420 Nucleotide excision repair
SNE_A07200 (ligA)
03430 Mismatch repair
SNE_A07200 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sng03032
]
SNE_A07200 (ligA)
03400 DNA repair and recombination proteins [BR:
sng03400
]
SNE_A07200 (ligA)
Enzymes [BR:
sng01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SNE_A07200 (ligA)
DNA replication proteins [BR:
sng03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SNE_A07200 (ligA)
DNA repair and recombination proteins [BR:
sng03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SNE_A07200 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SNE_A07200 (ligA)
MMR (mismatch excision repair)
DNA ligase
SNE_A07200 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SNE_A07200 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
HHH_8
RNA_pol_A_CTD
BRCT_2
RNA_ligase
UPF0758_N
zf-ribbon_3
Motif
Other DBs
NCBI-ProteinID:
CCB88597
UniProt:
F8L782
LinkDB
All DBs
Position
gsn.131:752733..754724
Genome browser
AA seq
663 aa
AA seq
DB search
MSKKEYLKLLEEIKRHNQLYFDQGMPEITDYEYDLLLKEAEKIEASHPEWVPADTPTCQV
QEQPTKGFKQVEHDVPMLSLANTYSREEVADFVARVYKLLEREDVEFCVELKMDGVALSL
RYEDGKLVRAVSRGNGRKGDDITANVKTIRSIPHELKGTNIPDLLEVRGEVFIPTKDFAE
MNREREEAGDVTWANPRNAAAGSLKLLDATEVAKRKLDIVFYNVITREKILKTQAENHHF
LKKMGLPVGSEKHFTVCKSLDEIFAFADRIEKERPSLPFEIDGIVIKVNHLRDHDILGAT
GKSPRWAAAYKFAPEQAETVIEDIIVQVGRTGVLTPVAELRPVPLAGSTISRATLHNEEE
VARKDIRVHDTVMIEKGGDVIPKVVEVIQSKRPKESKPWHMPTHCPICGAKVIRTEGEVA
VRCPNRISCGGQNLRRISFFASKNAMDIDHLGPEIVKKLVEIGFVSRLSDLYRLTENELA
QLEGFKEKSIHNLLDSLEKSKKVTLARFIFAIGIPYVGEGTAQLLADAAGSMDRLKEMTE
EELCEIDGVGDKVAESIVEFFSDEKHSQEIDELIELGVTPTAVHKKITGHAFAGKTFVLT
GSLEEFTRTDAANLIKERGGKVSSSVSKKTDFVLVGEDPGSKYDKAKQLGVSILDEKSFK
ASL
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaaagagtacctgaaacttttagaagaaatcaaaaggcacaatcagctctat
tttgatcaagggatgccagaaatcaccgactatgagtatgacttgctacttaaagaagct
gagaaaattgaagcgtctcaccctgagtgggtcccagcagacactccgacatgccaagtc
caggagcagccgacaaaagggttcaaacaagtggagcacgatgtgccgatgctttctctt
gcgaatacctactcaagggaggaagtggctgactttgttgctcgtgtctataaacttctc
gagcgggaagatgtagaattttgcgttgaactcaaaatggatggagtggccctttctctg
cggtatgaagacggaaaactcgtgcgagcagtttcccgtggaaacggacgcaaaggagat
gatatcacggctaacgtgaaaacgattcgttccattccccatgaactcaaaggaaccaat
atccccgatcttctcgaagtgcgaggcgaagttttcattccgacgaaagattttgctgag
atgaaccgtgaacgtgaagaagcgggagatgtcacctgggcaaatccacggaacgccgca
gcgggctcactcaaactgctcgatgccaccgaagtggctaaacggaagctcgacatcgtt
ttttacaatgttatcacccgtgaaaaaatcctcaaaacccaagcagagaatcaccatttt
ctcaaaaaaatgggacttcctgtaggaagtgaaaaacactttactgtctgcaaatccctt
gatgaaatttttgcctttgccgatcggattgaaaaagaacgtccttctctcccttttgaa
attgatggaattgtgatcaaagtgaatcatctccgtgatcatgacattttgggagctaca
ggaaagagcccgcgttgggcagctgcctacaaatttgctcccgaacaagcagaaaccgta
attgaagacatcatcgtccaagtcggacgcacaggagttctcacacctgtcgcagaacta
cgccctgttcctcttgctggaagtaccatttcccgagcgactttacataatgaagaagaa
gtggcccgcaaagacattcgagtccatgacacggtgatgattgaaaaagggggcgatgtt
atccctaaagtcgtcgaagtgatccaaagcaaacgacctaaagaatcgaaaccttggcat
atgcccacccattgccctatttgcggcgccaaagtgatccgcacagaaggagaagtagcc
gttcgctgtcccaatcgcatctcttgtggagggcaaaacttgcggcgcatcagttttttt
gctagcaaaaacgccatggacatcgatcatcttggaccagaaattgtcaaaaagctcgtc
gagattggatttgtgtcacgtctctccgatttgtatcgccttaccgaaaacgagcttgct
cagcttgaagggttcaaagaaaagtcgattcacaacttgcttgatagtcttgagaaatcg
aaaaaagtaacccttgcccgtttcatttttgctattggcattccttatgtcggagaaggg
accgcgcagctcttagccgatgcggctggatcgatggaccgtctcaaagagatgacagaa
gaagagctatgtgaaattgatggagtgggtgataaagtggctgagtcgattgttgagttt
ttctcagacgaaaagcactctcaagaaatcgatgaactcattgagctaggtgtcacaccg
accgcagtacacaaaaaaattacaggtcatgcctttgcaggcaaaacctttgttcttacc
gggtctctcgaagaatttacacgaacagatgcggccaatctcatcaaagaacgtgggggg
aaagtctctagttccgtcagtaaaaagaccgactttgtcttagtcggagaagatccaggt
tccaaatacgataaagcaaagcagcttggggtgtccattctggacgaaaaatcctttaaa
gcatctctctaa
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