Salvelinus namaycush (lake trout): 120017493
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Entry
120017493 CDS
T07522
Symbol
cxcl12a
Name
(RefSeq) chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1)
KO
K10031
C-X-C motif chemokine 12
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04060
Cytokine-cytokine receptor interaction
snh04672
Intestinal immune network for IgA production
snh04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
120017493 (cxcl12a)
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
120017493 (cxcl12a)
09150 Organismal Systems
09151 Immune system
04672 Intestinal immune network for IgA production
120017493 (cxcl12a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
snh04052
]
120017493 (cxcl12a)
00536 Glycosaminoglycan binding proteins [BR:
snh00536
]
120017493 (cxcl12a)
Cytokines and neuropeptides [BR:
snh04052
]
Cytokines
Chemokines
120017493 (cxcl12a)
Glycosaminoglycan binding proteins [BR:
snh00536
]
Heparan sulfate / Heparin
Chemokines
120017493 (cxcl12a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IL8
Motif
Other DBs
NCBI-GeneID:
120017493
NCBI-ProteinID:
XP_038816201
UniProt:
A0A8U0P1K5
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All DBs
Position
Sna22:6361905..6399605
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AA seq
98 aa
AA seq
DB search
MDLKLLAVMSVLAVATYVPFSQAKPISMMERCWCRSTVNTVPQRNIRELKFLHTPNCPFQ
VIAKLKNHKEVCINPETKWLQQYLKNALNKMKKAKQIN
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atggatttgaaactcttggcggttatgtctgtgcttgctgtggcgacatacgttcctttc
tcacaagctaagcccatcagtatgatggagaggtgctggtgtcgttctacagttaacacc
gtcccccagcgcaacatccgagaactgaagttcctacacacacccaactgccccttccaa
gtgattgccaagctgaagaaccacaaggaggtgtgtatcaaccccgagaccaagtggctg
cagcagtacctgaagaacgccctcaacaagatgaagaaagctaagcagatcaactag
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