Salvelinus namaycush (lake trout): 120020313
Help
Entry
120020313 CDS
T07522
Name
(RefSeq) plakophilin-1-like
KO
K10387
plakophilin 1
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
snh04812
]
120020313
Cytoskeleton proteins [BR:
snh04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filament-binding proteins
120020313
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arm
ARM_ARMC5
HEAT
HEAT_EZ
Atx10homo_assoc
Cnd1
Arm_2
HEAT_2
Adaptin_N
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
120020313
NCBI-ProteinID:
XP_038819818
UniProt:
A0A8U0P8C6
LinkDB
All DBs
Position
Sna2:complement(8653865..8663365)
Genome browser
AA seq
654 aa
AA seq
DB search
MVLSSKGSTVQRNMSSSSQWERRFPLSPPVARGQRNSSRSVPDMDPFPFPTTTQRPAQAP
ASALQQLQSSVPARQLQSNRSSFFLTERGNSQFISNGNAPSQVIVNGNDVQKKHSQLIAT
RQTKSSGQITSSQTRIERAPSNPSMAEPKISAGKSKIEAGMNDDGQLADITMTEAVQYLS
SGDVNYQHYGASFIQHSTYSEDKAKQEVLRLKGIPPLVNLLKSPSPQVQQTASAALRNLA
FKDAGNKEEVQRCGGITEALALLRDTDSTETQKQLTGLLWNLSSADSLKPELVRSALPVL
TETVVVPYTGGVDETNKNLDPEVFYHATACLRNLSCATQSNRQAMRNCRGLIDSLGSYVQ
DCVAAERPDDKSVENCVCVLHNLSFQLESEAPALFSRITALAGTVSRANASAETGPIGCF
SQQSSKIQEQESHFDYPVMEEQHPKGAGWLFHSKTMQSYLSLLRSSQREDTLEACCGALQ
NLTANQGIVSRVMSQNIVQKLNGLPEISRLLQSPNPSLQKTAVALVSNLAKNQRLQSIMA
RQTFPDLVGVLSSWTKEGTESDDTLAMACQTSHSLLMKEPELGKRLLSNNLVNSLNDLSK
NRLFPKASKAAGVLLYSLWSEKDIQSFLKKQGMNKGSFVNDITSVAHRSVQVVE
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atggtactgtcctccaagggatctactgttcagagaaacatgagcagctccagccaatgg
gagagacgattccctctcagtccccctgtagccaggggtcagcgcaacagcagccgcagt
gtgcctgatatggaccccttccccttccccaccactacacagcgccctgcccaggccccg
gcttcagccctgcagcagttgcagtcctcggtccccgcccggcagctccaatccaacaga
tccagcttcttccttactgagaggggcaacagccagttcatctccaacggcaacgccccc
tctcaggtcattgtcaatggcaacgatgtgcagaaaaagcacagccagttgattgccacc
cgtcagacgaaaagcagcggccagattaccagcagccaaactcgtattgagagggcacca
tcgaacccctccatggccgagcccaagatatcagcgggcaagagcaagattgaagcaggg
atgaatgatgatggccagcttgctgatattaccatgacggaggcggtgcagtacctgtcc
agtggagatgtgaactaccagcactatggcgcctcattcatccaacactctacctactca
gaggacaaggccaagcaggaggtgttgcggctcaaagggatccctcctctggtgaacctg
ctgaagagtcccagtccccaggtccaacagacagcctcggccgccctgcggaaccttgcc
tttaaagatgcgggcaacaaggaggaggtccagcgctgtgggggcatcactgaggcccta
gccctgctccgagacacagactctaccgagacacagaaacaactcacaggtctcctttgg
aacctgtcgtctgcagacagtctgaagccagagcttgtgcgtagcgctctgcctgttctg
actgagactgtggtagtaccttacacaggaggagtagatgagaccaacaagaacctggac
ccagaggtcttctaccatgctacagcatgtctacgaaatctgagctgtgcgacgcaaagc
aacaggcaagccatgcgtaactgtcgaggcctcatcgactctctgggcagttacgtccag
gattgtgtagctgcagagaggccagatgacaagtctgtggagaactgtgtctgtgtcctg
cacaacctgagcttccagctggagagtgaggccccggccctgttcagccggatcactgcc
ctggccgggaccgtcagccgggccaacgcctccgctgagaccggccccattggctgtttc
agccaacagagcagcaagatccaggagcaggagagtcactttgactaccccgtgatggag
gagcagcatcctaaaggagcgggctggctcttccactctaagaccatgcagagttacctg
tctctgctgaggtccagccagagagaagacaccctggaggcctgctgtggagccctgcag
aacctcaccgctaaccaaggcattgtttctagagtgatgagccagaacattgtccagaag
ctgaacggcttgcctgaaatctctcgcctgctgcaatctcccaaccccagcctacagaag
actgctgtggctttggtgtcaaacctagccaagaaccaacgccttcagagcatcatggcc
cgacagacgttcccagacctggttggcgtcctcagctcatggaccaaggaagggacagag
tctgacgacaccctggccatggcgtgccaaaccagccacagtcttctgatgaaggagcct
gagctggggaagcgcctgctgagcaacaacctggtcaactcactcaacgacctgagcaag
aacaggcttttcccaaaggcaagcaaagctgcaggtgtgctcctctacagcctctggtca
gagaaggacatacagagtttcctaaaaaagcaagggatgaataagggttcctttgtgaat
gacatcaccagcgtggctcacaggtctgtgcaggtcgttgagtaa
DBGET
integrated database retrieval system