Salvelinus namaycush (lake trout): 120027290
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Entry
120027290 CDS
T07522
Name
(RefSeq) tumor necrosis factor-like
KO
K03156
tumor necrosis factor superfamily, member 2
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04010
MAPK signaling pathway
snh04060
Cytokine-cytokine receptor interaction
snh04150
mTOR signaling pathway
snh04210
Apoptosis
snh04217
Necroptosis
snh04350
TGF-beta signaling pathway
snh04620
Toll-like receptor signaling pathway
snh04621
NOD-like receptor signaling pathway
snh04622
RIG-I-like receptor signaling pathway
snh04625
C-type lectin receptor signaling pathway
snh04920
Adipocytokine signaling pathway
snh05132
Salmonella infection
snh05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
120027290
04350 TGF-beta signaling pathway
120027290
04150 mTOR signaling pathway
120027290
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
120027290
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
120027290
04217 Necroptosis
120027290
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
120027290
04621 NOD-like receptor signaling pathway
120027290
04622 RIG-I-like receptor signaling pathway
120027290
04625 C-type lectin receptor signaling pathway
120027290
09152 Endocrine system
04920 Adipocytokine signaling pathway
120027290
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
120027290
09171 Infectious disease: bacterial
05132 Salmonella infection
120027290
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
snh04052
]
120027290
00536 Glycosaminoglycan binding proteins [BR:
snh00536
]
120027290
Cytokines and neuropeptides [BR:
snh04052
]
Cytokines
Tumor necrosis fators
120027290
Glycosaminoglycan binding proteins [BR:
snh00536
]
Heparan sulfate / Heparin
Cytokines
120027290
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNF
ZFYVE21_C
Motif
Other DBs
NCBI-GeneID:
120027290
NCBI-ProteinID:
XP_038828137
UniProt:
A0A8U0PNH4
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Position
32:complement(31515176..31518224)
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AA seq
245 aa
AA seq
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MEGDCSRVTVDLENSPVYPSPTVTLVREKSTRQWRLCGALLAMALCVSAALFITSHAKKQ
DSNEKANGLPLTLRQLSGNRKTAIHLEGEYNANGGYKSSVEWTDDEGQGFSQGGLELNNN
EIVIPQTGLYFIYSQVSFHVSCKADRKHPNNQDMVHLSNTVTRWSPSYGTEDNKEYQTLL
NSVRTVCKKSSNNEAVSEGKWYNAVYVGAVFSLEKGDRLRTVTENRLLPYLESGAGKNFF
GVFAL
NT seq
738 nt
NT seq
+upstream
nt +downstream
nt
atggaaggtgattgcagcagagtgacggtagacttggagaatagccctgtgtacccgtca
ccgaccgtgaccctggtacgggagaagtccacacgacagtggaggctgtgtggtgccctg
ttggcaatggcactgtgtgtctcagctgcacttttcattacctctcatgccaagaaacaa
gattccaacgagaaagctaatggacttccgcttacgttgagacaactctctggaaacaga
aagactgccattcatttagaaggtgaatacaacgccaatggaggatacaagtcctcagtg
gagtggacagatgacgagggccagggattctcacaggggggtcttgaactcaacaacaac
gaaattgtgattccccagacaggcctatacttcatctacagccaagtctctttccacgtc
agctgcaaggccgaccgcaagcaccctaacaaccaggacatggttcacctgagtaacacg
gtcacacgctggtccccaagctacggcaccgaagacaacaaggagtaccagacgctgctc
aactctgtacgtaccgtgtgtaagaagtcttccaacaacgaggctgtgagtgaaggaaaa
tggtataatgcagtgtatgtgggagcagtgttcagcctggagaagggagacaggctccgg
acagtcacagagaacaggcttctaccctatctggagagtggcgctgggaagaacttcttt
ggcgtgttcgccttgtaa
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