Salvelinus namaycush (lake trout): 120029397
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Entry
120029397 CDS
T07522
Name
(RefSeq) slit homolog 1 protein-like
KO
K06838
slit 1
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
snh00536
]
120029397
Glycosaminoglycan binding proteins [BR:
snh00536
]
Heparan sulfate / Heparin
Axon guidance molecules
120029397
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GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
LRRNT
LRR_1
LRR_9
LRR_14
LRRCT
LRR_EndoS
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
120029397
NCBI-ProteinID:
XP_038830546
UniProt:
A0A8U0PR76
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Position
Sna35:10230649..10393332
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AA seq
815 aa
AA seq
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MPGRGACSGAGVGRLPGYWVCVLVLCALVTCYASTCPALCTCSGTTVDCHGLGIKTMPRN
IPRNTERMELNGNNLTRITKTDFSGLKYLRVLQLMENQIGAIERGAFDDMKELERLRLNR
NQLQHLPELLFQKNPALSRLDLSENNIQSIPRKAFRGATDIKNLQLDKNHISCIEDGAFR
ALRSLEVLTLNNNNISSIPVSSFNHMPKLRTFRLHSNNLHCDCHLSWLAEWLRQRPTIGL
FTQCTAPSPLRGLNVAEIQKHEFTCSGHSESSGLQPCTLGGGTCPAMCTCSNNIVDCRGK
GLTAIPASLPDTMAEIRLEQNGIKSVPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS
LNSLVLYGNKITELPKGVFDGLYALQLLLLNANKIHCVRANAFTDLQNLSLLSLYDNKIQ
TVAKGTFASLRAIQTLHLAQNPFICDCNMKWLADYLRSNPIETSGARCTSPRRLANKRIG
QIKSKKFCCSAKEQYFIPGTEDTRLNNECNSDPVCPPKCRCESNVVDCSNLRINKIPEHI
PASTTELRLNNNEITTLEATGVFKALSQLNNINLSNNKITEIEDGAFEGAGSVNELHLSA
NQLDSVRSGMFKGLEGLRMLMLRNNKIRCIHNNSFTGLHNVRLLSLYDNQLTTITPGAFD
TLQTLSTLNLLANSFNCDCRLAWLGDWLRSRKIVTGNPRCQRPAFLKEIPLQDVALPDFR
CEEGVEEMSCVPRPQCPSECTCLETVVRCSNKHLRALPKGIPRNVTELYLDGNQFGMVPN
ELSTFKYLQLVDLSNNKINSLTISSFSNMSQLTTL
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgcctgggagaggagcttgttctggggcaggcgtggggaggttacctgggtactgggtg
tgtgtgctggttctctgtgccctggtgacatgctatgccagcacatgccctgccctgtgt
acctgcagtggcaccacagttgactgccatgggctgggcatcaaaaccatgccccggaat
ataccccgcaacacagagagaatggaactgaatgggaataacctcacacgcatcaccaag
actgacttctccggactcaagtacctccgcgtgctgcagctgatggagaatcagattgga
gcgatagagcgtggagcgtttgatgacatgaaggagctggagagactgcgcctgaacaga
aaccaactgcagcaccttccagaactactgtttcagaagaaccctgcactgtcacgtcta
gatctgagtgagaacaacatccagtccatccccagaaaggctttcagaggagctacagac
atcaagaaccttcagttggataagaaccacatcagctgcatcgaggacggagctttcaga
gcactgaggagcctggaagtactgactctgaacaacaacaacatcagcagcatcccagtc
tccagcttcaaccacatgcccaaactacgcaccttccgtctccactccaacaacctgcac
tgtgactgtcacctgtcctggttggccgagtggttaagacaaaggcctacaattggtctg
ttcacccagtgcacagctccatccccgcttagaggactcaacgtggctgagatacagaaa
catgagtttacctgctcaggtcactcagagagctccggcttgcagccttgcaccctaggg
ggaggtacgtgccctgccatgtgtacctgcagtaacaacattgtggactgcagagggaaa
ggcctcacagctataccagccagccttccagacaccatggcagagattcgtctggagcag
aatgggatcaagtcagttcctcccggtgccttctctccctacaagaagctgcgcaggata
gacctgagtaataaccagatatcagaactggccccagatgctttccaaggcctgagatct
ctcaactctctagtcctgtatgggaataagattacggagcttcccaaaggagtgtttgat
ggactatatgccctgcaactactgttgttgaatgccaataagatccactgtgttcgggcc
aatgccttcacagacctgcagaacctctctctactgtctctgtatgacaacaagatacag
actgtggccaagggcaccttcgcttctctcagagctatacagacacttcacctggcccag
aacccgtttatctgtgactgtaatatgaagtggctggcggactacctgcgctccaacccc
atagagaccagcggtgcccgttgtaccagccccagacgactggccaacaaacgcatcggg
cagatcaagagcaagaagttctgctgctctgccaaggaacaatacttcatccctggcacc
gaggacacccgtctgaataatgagtgtaacagtgatccagtctgtcctcctaaatgtcgc
tgtgagtccaatgtggtggactgctccaacctccgaatcaacaagataccagaacacatc
cctgcctctaccactgaacttcgtctgaacaacaatgagatcactacactggaggctaca
ggagtcttcaaggccctctcccagctcaacaacattaaccttagcaacaataagatcacg
gagatcgaggatggagcgttcgagggggcggggtctgtcaacgagctccatctttcagcc
aatcagctggattctgtccgcagcggaatgttcaaaggactggagggactacggatgcta
atgttgaggaacaacaagatcagatgtatccataacaatagcttcaccggcctgcacaac
gttcgcctgttgtctctctatgacaaccagctaactaccatcacccctggagccttcgat
accctgcagacactgtctacacttaacctcctggctaactccttcaactgtgactgtcgt
ctggcctggcttggtgattggctgagaagcagaaagatcgtcacgggcaatccccgatgc
cagcgccccgccttcctcaaagagattccactacaggacgtggcactgcctgacttccgc
tgtgaagagggagtggaggagatgagctgtgtgcccaggcctcagtgtcccagtgagtgt
acatgtctggagactgtggtacgctgcagtaacaaacacctccgtgcgctgcccaaaggc
atccccagaaacgtcactgaattgtatctagatgggaaccagttcggcatggtgccaaat
gagctttctacctttaaatacctccagttagtagaccttagtaacaacaagatcaactct
ctcaccatctcttcattctccaacatgagtcagctcaccacactgtaa
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