KEGG   Salvelinus namaycush (lake trout): 120031688
Entry
120031688         CDS       T07522                                 
Name
(RefSeq) DLA class II histocompatibility antigen, DR-1 beta chain-like
  KO
K06752  MHC class II antigen
Organism
snh  Salvelinus namaycush (lake trout)
Pathway
snh04145  Phagosome
snh04514  Cell adhesion molecules
snh04672  Intestinal immune network for IgA production
snh05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:snh00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    120031688
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    120031688
 09150 Organismal Systems
  09151 Immune system
   04672 Intestinal immune network for IgA production
    120031688
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    120031688
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:snh04147]
    120031688
Exosome [BR:snh04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   120031688
  Exosomal proteins of epithelial cells
   120031688
  Exosomal proteins of breast milk
   120031688
SSDB
Motif
Pfam: C1-set C2-set_2 Psg1 Ig_3 DUF3040 Cna_B
Other DBs
NCBI-GeneID: 120031688
NCBI-ProteinID: XP_038833413
UniProt: A0A8U0PY27
LinkDB
Position
Sna3:43293865..43297600
AA seq 165 aa
MYVLNCFSIHLLLLFSSLSEVVEPNVTLRLEGPSSDSSLVCSVHFFYPKHIRVTWLRNGE
EVTSDVTSTDILANGLWSYQIQSYLKYTPTTGERIICMVEHISQTEPKLYHWDPSLPKSE
KNKIVIGVCGLLLGVVFVVAGLIYWKKSTGRLSGLIGECDYGTCD
NT seq 498 nt   +upstreamnt  +downstreamnt
atgtatgtgctgaattgcttctccatccacctgctgctcctcttctcctctctgtctgaa
gtggttgagcccaacgtcacactgaggctagaggggccatccagtgactccagccttgtg
tgtagcgtccacttcttctaccccaaacacatcagagtgacgtggctgaggaacggggag
gaagtgacctcagatgtgacttccactgacatactggccaatggactctggagctaccag
atacagtcctatttgaagtacacacccacaactggagagagaatcatctgtatggtggag
cacatcagccagactgagcccaaactttatcactgggacccctccttgcctaagtctgag
aagaataagatagtgatcggtgtctgtgggctgctgctgggggtggtctttgtagtagct
ggactgatctactggaagaaatctactggacggctgtcgggtcttattggtgaatgtgat
tatgggacttgtgattga

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