Salvelinus namaycush (lake trout): 120034082
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Entry
120034082 CDS
T07522
Name
(RefSeq) sodium channel protein type 4 subunit alpha B-like
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
snh04040
]
120034082
Ion channels [BR:
snh04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
120034082
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
IQ
Zip
GPHH
Trimer_CC
Motif
Other DBs
NCBI-GeneID:
120034082
NCBI-ProteinID:
XP_038836436
UniProt:
A0A8U0Q5C4
LinkDB
All DBs
Position
41:2052913..2088671
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AA seq
1922 aa
AA seq
DB search
MDKLRDPGVVAFLAQQNAKMVALLPPTGTEVFRRFTLESLAEIERRMAEEAEEQERKKAL
NIEVAEEDLPKPAVDLEAGKALPFIYGDPPPELFNTPLEELDPFYKSHKTFIVITKGNTI
FRFNAEPACYILTPFSILRRGSIKILIHSLFSMFIMLTIMSNCVFMTMSDPPAWSKTVEY
VFTGIYTFEATVKVLSRGFCVGDFTFLRDPWNWLDFMVISMAYLTEFVDLGNVSALRTFR
VLRALKTITVIPGLKTIVGALIQSVKKLADVMILTVFCLAVFALVGLQLFMGNLKQKCVY
WPPVEWRLNSTDMDNITVAFNDTDGFNDVMGYSGTNSSNSTWDFKAYIDDKVNHYFLPGM
LDPLLCGNASDAGNCPEGYTCMKAGGNPNYGYTSYDSFGWAYLALFRLMTQDFWENLFQL
TLRSAGKTYMIFFVVVIFLGSFYLINLILAVVAMAYAEQNEATMAEAKEKEEEYAMIMVQ
LKERREAEVKERHDRHHEHHEHAEVAGSQTSLSSRTSKKKKGEKADQEVADDEACTSSSL
YSEAIKDSNGGLVISPNANKVLADQESAVVLKRARDPKGSEDQLEVAGLQRKTPSSSSVY
SQDAMDDLEEELRPCPPCWYKCSDIFLKWNCCVPWVTFKKWMYFIVMDPFVDLGITICIV
LNTMFMAMEHYPMTPEFEEVLSVGNLVFTGIFTAEMVLKLFAMDPYYYFQVGWNIFDSII
VTMSLVELGLANVEGLSVLRSFRLMRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAI
IVFIFAVVGMQLFGKSYKECVCKISLDCELPRWHMHDFFHAFLIIFRVLCGEWIETMWEC
MEVAGQGMCLVVFMMVMVIGNLVVLNLFLALLLSSFSGDNLAAPEEDGEMNNLQIATSRI
TRGIDWAKAYIIEQVWIIIGKQPKEDGDGADGNGGSNGDVDGLPKDSLALKNVNSSDNPK
ADLELKMLDVWIDDVNPSGFLTNDNLTLDVPIAKMESDDDEDDCSEEEEGEGANGNAKED
TELKKPIAPDNASSICSTVDNPPEVEEEEEEEADPTSPENCWTEKCIGRCPCLDFDITTG
KGKTWWNFRKACFLIVEHNYFETFIIFMILMSSGALAFEDIYIEQRRTIKIILEYADQVF
TYVFIIEMLLKWVAYGFQAYFTNAWCWLDFLIVDVSLISLTANILGYAELGPIKSLRTLR
ALRPLRALSRFEGMRVVVNALVGAIPSIFNVLLVCLIFWLIFSIMGVNLFAGKYYYCFNT
TSEERFSADVVNNKTECFQLMEGNDDVRWMNAKVNYDNVAMGYLSLLQIATFKGWMDIMY
GAVDSRFVEDQPIYEDNVYMYIYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGKDIF
MTEEQKKYYNAMKKLGSKKPQKPIPRPQNKFAGLIFDLITQQFFDIFIMVLICLNMVTMM
VETDGQSKEKEDILFLINLVFIIVFTTECILKLIGLRQYFFSVGWNIFDFVVVILSIVGL
LLADLIEKYFVSPTLFRVIRLARIGRVLRLIRGAKGIRTLLFALMMSLPALFNIGLLLFL
IMFIFSIFGMSNFAYVKKEAGIDDMFNFETFGNSIICLFMITTSAGWDGLLSPILNSRPP
DCDPDVENPGTDVRGNCGSPGLGICFFCSYIIMCFLVVVNMYIAIILENFNVATEESGDP
LCEEDFEMFYETWEKFDPDASQFIAYDILSEFCDTLKDPLRIPKPNAIKLITMDLPIVPG
DKIHCLDILLALTTEVLGESVEMDAMKESMEEKFMANNPSKVSYEPITTTLRRKQEEVAA
VVIQRAYRKHLLRRSMKLASYKYREKKALTKEDEAPPETEGMIAIRMNKLYGSQQSLGVD
DTVVDMDSHEKRESNELTETQPPVETAEEPPPVELQNEILLHSAPFVIPVSIRNSQLKES
DV
NT seq
5769 nt
NT seq
+upstream
nt +downstream
nt
atggacaagctgagagaccccggtgtggttgcatttctcgcccagcagaatgccaagatg
gtcgccctgctccctcccacaggcaccgaagtgtttcgccgcttcacccttgagtcgctg
gcggagatcgagaggcggatggccgaagaagcagaggagcaggagagaaaaaaggccctg
aacattgaggtggcagaggaggacctgccaaagccagccgtcgacctggaggccggcaag
gccctgccattcatctacggagacccgccacctgaactgttcaacacgcccctggaggaa
ctggatcctttctacaaatcacacaaaacctttattgtcatcaccaaagggaatacaata
ttcaggttcaatgctgagcctgcctgctatattctaacacccttcagtattctcaggaga
ggatccatcaaaattctcatacattcattatttagcatgttcatcatgttaacaatcatg
tccaactgtgtgttcatgacgatgagtgaccctccggcatggagtaaaactgttgaatat
gttttcactggtatctatacctttgaggcaacagttaaagtgttgtccagaggcttctgt
gttggagatttcacattccttcgagatccatggaactggctggattttatggtgatcagc
atggcgtacctcacagagttcgttgacctgggcaacgtgtctgccctcaggacgttccgt
gtgctccgagcccttaaaacgatcactgtaattcccggtctgaaaaccattgtgggcgct
ttgatccagtcggtgaagaagctggctgatgtgatgatcctgacagtgttctgcctggct
gtgttcgctctggtcggccttcaactgttcatgggaaacctgaagcagaagtgtgtttac
tggccccctgtggaatggcgtttgaactctaccgacatggacaacatcactgtggccttc
aacgacaccgatggttttaatgacgtcatgggctacagtggcacaaacagcagcaacagc
acgtgggacttcaaggcgtacatcgacgataaagtgaaccattacttccttcctggaatg
ttagaccctcttctttgtggaaacgcttctgatgctggaaattgccctgaaggatacacg
tgtatgaaggccggagggaatcccaactatggatacacaagctacgacagttttggatgg
gcctaccttgccctatttcggcttatgacacaggacttctgggaaaatctattccagctg
actcttcgctcagcagggaaaacatacatgattttctttgtggtggtgatcttcctgggc
tcgttctacctgatcaacctgatcctggctgtggtggccatggcgtatgcggagcagaac
gaggccaccatggccgaggccaaggagaaggaggaggagtacgccatgatcatggtgcag
ctgaaggaacggagagaagcggaggtcaaagagagacatgacaggcatcatgaacaccat
gaacacgctgaagttgctggcagtcagacgtcactgtccagtagaacgtctaagaaaaag
aaaggtgaaaaggcagatcaagaggtcgctgatgatgaggcgtgtacgtcctccagcctt
tatagcgaggctataaaggactccaacggaggcctcgtgatcagtcccaacgccaacaag
gtcctggcagaccaggagtctgctgttgtgttgaagagggcccgtgatcccaaggggagc
gaggaccagctggaagtagcaggcctgcagaggaagacacccagttcatccagtgtttac
agccaagatgccatggacgatttggaggaggaactgagaccttgtccgccttgctggtac
aagtgttcagacatattcctgaaatggaactgctgtgtgccctgggtgactttcaagaag
tggatgtacttcatagtgatggacccattcgtggacttgggtatcaccatctgcattgtg
ctcaacaccatgttcatggccatggagcactaccccatgacaccagagtttgaagaagtg
ctgagtgtggggaacttggtcttcacaggaatcttcacagcagagatggtgctgaagctc
ttcgccatggatccgtactactacttccaggtcgggtggaacatcttcgacagcatcatt
gtgacaatgagcctggtggagctggggctggccaacgtcgagggtctgtccgtgctccgt
tccttccgtctgatgcgtgttttcaagctggccaaatcctggcccacactcaacatgcta
atcaagatcatcggtaattcagtgggcgcactgggtaacctcaccctggtcctggccatc
atcgtcttcatcttcgccgtggtgggcatgcagctcttcggcaagagctacaaagagtgt
gtctgcaagatctccttggactgcgagctgccccgctggcacatgcatgacttcttccac
gcttttctcatcatcttccgggtgctgtgcggagagtggatcgagaccatgtgggagtgc
atggaggtggccggacagggcatgtgtctcgtcgtcttcatgatggtcatggtcatcggt
aacctagtggtgttgaacctcttcttggccttgctgctgagctcgttcagcggtgacaac
ctggcggctccagaggaggacggggagatgaacaacctgcagatcgccaccagcaggatc
accaggggcatcgactgggccaaggcctacatcatcgagcaggtctggatcatcatcggg
aagcagcctaaggaggatggagacggggctgacggtaatgggggtagtaacggggatgtg
gacggcctcccaaaggacagcttggctttgaaaaatgtaaactccagtgacaacccaaag
gctgatttagagcttaaaatgctggacgtttggatagacgacgttaacccaagtggattt
cttacaaatgacaatttgaccctggatgtgcctattgccaaaatggagtcggatgatgat
gaggatgactgctctgaagaggaagaaggtgaaggcgcaaatggaaacgctaaagaggat
actgagttaaagaaacctattgcaccggacaatgcctcttcaatatgcagcacagtggac
aatccccctgaagtggaggaagaggaggaagaagaggcagaccccaccagccctgagaac
tgctggaccgagaaatgcattgggcgatgcccttgccttgattttgacatcaccacgggc
aaagggaagacttggtggaacttcaggaaggcatgcttcctcattgtggagcacaactac
ttcgagaccttcatcatcttcatgatcctgatgagtagtggagctttggcttttgaagac
atatacattgaacagcgcaggaccataaaaattatcctggaatatgccgatcaagtcttc
acctacgtgttcattattgagatgctcctgaagtgggtggcttacggattccaggcctac
ttcacaaacgcatggtgctggctggacttcctcattgtggatgtgtctttgattagctta
acggctaacatcctgggctatgctgaacttggaccaatcaaatctcttcgaactttaagg
gctttgcggcccctccgcgccctgtccagatttgagggaatgagggtggtggtgaacgct
ctggtgggggccattccttccatcttcaacgtgcttctagtgtgcctcatcttctggctc
atcttcagcatcatgggagtcaacctgtttgctgggaagtactactactgcttcaacacc
acgtctgaggagaggttctctgctgacgttgtgaacaacaagaccgaatgcttccaacta
atggagggtaatgacgatgtgcgctggatgaacgcaaaggtcaactatgacaacgtggcc
atgggctacctctccctcctgcaaatagcaacgtttaaaggatggatggatataatgtat
ggcgctgtggattcacgttttgtggaagaccagcccatatatgaggataatgtttacatg
tacatctactttgtcatattcatcatctttgggtccttcttcaccctgaatctcttcatc
ggtgtcattatcgacaacttcaaccaacagaaaaagaagtttggagggaaagacattttc
atgacagaggaacagaagaaatactacaatgccatgaaaaagcttggttccaagaagcca
cagaaacccattcccagaccccagaacaaattcgcaggccttattttcgacctgatcacc
caacaattcttcgacatcttcatcatggtgctgatctgcctcaacatggtaacgatgatg
gtggagacggacggccagagcaaggagaaggaggatatactcttcctcatcaacctggtg
tttatcatcgtcttcaccacagagtgtatcctcaagttgatcggactgcggcaatatttt
ttttccgtcggatggaatatttttgattttgtcgtagtcattctctccatcgttggttta
ctgctggcggacctcatagagaagtattttgtctcacctacccttttccgtgtcataaga
ctggccaggattggtcgagttctgagactcatccgaggagctaaaggcatccggacactg
ttgtttgccctgatgatgtcacttcctgctctcttcaacattggcctcctgctcttcctc
atcatgtttatcttctccattttcggaatgtccaactttgcgtatgtcaagaaggaggcc
ggaatagacgatatgttcaattttgaaacttttggcaacagtataatttgtctgttcatg
atcacaacctcagccggttgggatggtctcctctcacccattctgaatagtagacctccg
gactgtgacccggacgtggaaaatcccggcacagatgtaagaggcaactgcggcagccct
ggtttgggaatttgttttttctgcagctacatcatcatgtgtttccttgttgtggtcaac
atgtacattgccattattctcgagaacttcaatgtggccacagaggagagtggcgacccg
ctgtgtgaggaagacttcgagatgttctacgagacctgggagaagttcgaccctgacgcg
tcacaattcatcgcctatgacattttgtcggagttctgtgacacgcttaaagacccgctc
aggatccccaaacccaacgcaatcaagctgatcaccatggaccttcccattgtccctggg
gataagatccactgtctggacatcctgctggcgctgaccacagaggtgctgggagagtca
gtggagatggatgccatgaaagaaagcatggaggagaagttcatggccaacaacccctct
aaagtgtcatacgagccaatcaccaccaccctgaggcgaaagcaggaggaggtagcagct
gttgttattcagagagcctatcgtaagcatctgctgagacgttcgatgaaactcgcttcc
tacaagtaccgcgagaagaaagcgttaaccaaggaggacgaagcgccgccagagacggag
ggaatgattgccatcaggatgaacaaactgtatggaagccaacaatccctcggagtggat
gacaccgttgtagatatggattctcatgaaaaacgggagagcaacgaactgacagagaca
caacctcctgtggagaccgctgaagagccgccgcctgtggagcttcagaacgagatcctc
ttgcactctgccccctttgtcatccctgtctcaatccgtaactcacagctgaaagagtcc
gatgtttga
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