Salvelinus namaycush (lake trout): 120034674
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Entry
120034674 CDS
T07522
Name
(RefSeq) sodium channel protein type 4 subunit alpha B-like isoform X1
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
snh04040
]
120034674
Ion channels [BR:
snh04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
120034674
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
IQ
GPHH
FGF-BP1
Motif
Other DBs
NCBI-GeneID:
120034674
NCBI-ProteinID:
XP_038837205
UniProt:
A0A8U0Q5U9
LinkDB
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Position
Sna3:63500845..63543864
Genome browser
AA seq
1849 aa
AA seq
DB search
MPTRKITLLEAWERHRTFRRKKVKDLKICPRLLPLLRDPSVVASLTQQNAKMVALLPPTG
TEVFRHFTLESLAEIDRRMAEEAKEQKKQKTLNIEVAEQDLPKPAVNLEAGKILPFIYGD
PPPELFNTPLEELDPFYKSHKTFIVITKGNTIFRFNAEPACYILTPFSILRRGSIKILMH
SLFSMLIMLTVMSNCAFMTMSDPPAWSKTVEYVFTGIYTVEATIKVLSSGFCVGDFTYFR
DPWNWLDFILISMTYLTEFVDLGNVTVFRMFRVLRALKLITVIPGLKTIVGSLIMSVKKL
ADVMILTVFCLAVFAMIGLQMFMGTLKQKCVHWPPGEWHFNSTYMGNIAMANGFNDVMAY
NGASTGNSTWDFKAYINDIANHYFLPGMLDALLCGNASDAGICPEGYTCMKAGGNPNYGY
TSYDSFGWAYLALIQLMTLDFWENLLQLTLRSAGKTYMIFFVVVIFLCSFYLINLILAVV
AIAHAEQNEATMAEAKEKEEEYAMIMVQLKRASVPKGSKDQLEGAGLQKKTPSVYSQDAM
DDLEEELRPCPPCWYKCSDVFLKWNCCVPWVTFKKWMYFIVMDPFMDLFITICTVLNIMF
LAMEHYPMTPQFEEVLSVGNLVFTGIFTAEMVLKLIAMDPYYYFQVGGNIFDSIIVTISL
MELWLADVEGLYVLCSFRLMRVFKLTKSWPTLNMTIKIIGNSVGTLVNITLVLAIIVFMF
AVGGMQLFGKSYKECVCKISLDCMLPRWHMDDFFHSFLIIFRVLCGEWIETMWDCMEVAG
QGVSLVFFMMVMVICKLVVLNVFLTFLLSSFSHYNLAAPEEDGEITNLQIATSRITRGID
WAKAYVIKQFCIIIGNQPKEDGERADGNRGSNGDLDGLPKDSLALKNVYSSDNPKADLEL
KMLDDVNPSGFLTNANLTLDVPFAKMESDDDEDDSSEEKGEGANEDAKGNTELRKPIAQD
NASLICRTADNPPEVEKEEANPTSPENCWTEKCIGRCPCLDFDITTGKGKTWWNFRKTCF
LIVEHNYFQSFIIFMILMSSGALAFEDIHIEQRRTIKVILEYADQFFTYVFIIEMLLKWV
AYGFQAYFTNAWCWLDFLIVDVSMISLTANFLGYAELGPIKSLRKLRALRPLRALSRFEG
MRVVVNALVGAIPSIGNVLLVCLIFWLIFSIIGVNLFAGKYHYCFNTTSEELFSAEVVNN
KTECVQLIEDNSDVRWMNSKINFDNVAVGYLSLLQVATFKGWLDIMYSAVDSRVVGEQPM
YEDNVYMYIYFVMFVIFGSFFTLNLFIGVIIDNFNQQKKKFGGRNIFMTEEQNKYYNAMK
KLGSEKLQKPIPRPKNKFAGIIYDLITQQFFEIFIFVLICLSMVTMMVDTDDQSEEKDKI
LFFINLVFIFIFIAECILKLIGLRQYYFTVGWNILDFVVVILSIFGLLLADLIEKYFVSP
NLFRVVRLARIGRVLRLIRGAKGIRTLLFALRMSLPAIFNIGLLLFLVMFIFSIFGMSNL
AYVKKEAGIDDMINFETFGNSIVCLFVLTTSAGWDSILSRILNSAPPDCDPDMENPGTDV
RGNCSSLVWGICFICSYIIVCFFLVVNMYIAIILENFNVAIEESGNPLCEEDFEMFYETW
EKFDPDASQFIAYDILSEFCDTLKDPLRIPKPNAIKLITMDLPIVPGDKIHCLDILLALT
TEVLGESGEMDAMKESMEEKFMANNPFKVSYKPITTTLRRKQQEVAAVVIQRACRKHLLR
SSMKLASYKYHEKKELTKEDEAPPEQEGKIAIRMSKLYGSQQSLGVDETVVDMDSYVNRE
RKELTATQPPVETTETPPPVELQNEIISHSAPFVIPASTHNSQLKEFHV
NT seq
5550 nt
NT seq
+upstream
nt +downstream
nt
atgccgacccgaaagataacactgctggaagcctgggagaggcacaggacctttcggagg
aagaaagttaaagacctgaaaatatgtcctcgtctactcccactgctgagagaccccagt
gtggttgcatctctcacccagcagaatgccaagatggtcgccctgctccctcccacaggc
accgaagtgttccgccacttcacccttgagtcgctggcggagattgataggcggatggcc
gaggaagcaaaggagcagaagaaacaaaagaccctgaacattgaggtggcagagcaggac
ctgccaaagccagccgtcaacctggaggccggcaagatcctgccgttcatctacggagac
ccgccacctgagctgttcaacacgcccctggaggaactggatcctttctacaaatcacac
aaaacctttattgtcatcaccaaagggaacacaatcttcagattcaatgctgagcctgcc
tgctacattctgactcccttcagtattctcaggagaggatccatcaaaattctcatgcat
tctttgtttagcatgctcatcatgttgacagtcatgtccaactgtgcgtttatgacgatg
agtgaccctccggcatggagtaaaactgttgaatatgttttcactggtatctataccgtt
gaggcaacaattaaagtgttgtccagtggcttctgtgttggagatttcacatactttcga
gatccatggaactggctggatttcattttgatcagcatgacgtacctcacagagtttgtt
gacctgggcaacgtgactgtcttcaggatgttccgtgtactccgagcccttaaattaatc
actgtaattcccggtctgaagaccattgtgggctctctgatcatgtcagtgaagaagctg
gctgatgtgatgatcctaacagtgttctgcctggctgtgttcgctatgatcggcctgcaa
atgttcatgggaaccctgaagcagaagtgtgttcactggccccctggtgaatggcatttc
aactccacctacatgggaaacatcgctatggctaatggttttaatgatgttatggcctac
aatggcgcaagcaccggcaacagcacctgggacttcaaggcatacatcaacgatatagcg
aaccattacttccttcctggaatgttagacgctcttctttgtggaaacgcttctgatgct
ggaatatgtcctgaaggatacacgtgtatgaaggccggagggaatcccaactatggatac
acaagctacgacagttttggatgggcctaccttgccctaattcagctcatgacactggac
ttctgggaaaatctactccagttgactcttcgctcagccgggaaaacctacatgattttc
tttgtggtggtgatcttcctgtgctcgttctacctgatcaacctgatcctagctgtggtg
gccatagcgcatgctgagcagaacgaggccaccatggccgaggccaaggagaaggaggag
gagtacgccatgatcatggtgcagctgaagagggccagtgtacccaaggggagtaaggac
cagctggaaggagcaggccttcagaagaagacacccagtgtctacagccaagatgccatg
gacgatttggaggaggaactgaggccttgtccgccttgctggtacaagtgttcagacgtc
ttcctgaaatggaactgctgtgtgccctgggtgactttcaagaagtggatgtacttcata
gtgatggacccattcatggacttgttcatcaccatctgcactgtactcaacatcatgttc
ttggccatggagcactaccccatgacaccacagtttgaagaagtgctgagtgtggggaac
ttggtcttcacgggaatcttcacagcagagatggtgctgaagctcatcgccatggatccg
tactactacttccaggtcggggggaacatcttcgacagcatcattgtgacaatcagcctg
atggagctgtggctggccgacgtcgagggtctttacgtgctttgctccttccgtctgatg
cgtgttttcaagctgaccaaatcctggcccacactcaacatgacaatcaagatcatcggt
aattcagtggggaccctggttaacatcactctggtcctggccatcatcgtcttcatgttt
gccgtggggggcatgcagctcttcggcaagagctacaaagagtgtgtctgcaagatctcc
ttggactgcatgctgccccgctggcacatggatgacttcttccactcttttctcatcatc
ttccgggtgctgtgcggagagtggatcgagaccatgtgggattgcatggaggtggccgga
cagggcgttagcctcgtcttcttcatgatggtcatggtcatctgtaaactagtggtgttg
aacgtcttcttgacctttctgctgagctcgttcagccattacaacctggcggctccagag
gaggacggggagataaccaacctgcagatcgccaccagcaggatcaccaggggcatcgac
tgggccaaggcatacgtcatcaaacagttttgcattatcataggcaaccagcctaaggag
gatggagaacgggctgacggtaataggggtagtaatggggatttggacggcctcccaaag
gacagcttggctttgaaaaatgtttattccagtgacaacccaaaggctgatttggagctc
aaaatgctggacgatgttaacccaagtggatttcttacaaatgcgaatttgaccctggat
gtaccttttgccaaaatggagtctgatgatgatgaggatgacagctctgaagagaaagga
gaaggcgcaaatgaggatgctaaagggaatactgagctaaggaaacctattgcacaggac
aatgcctctttgatctgcaggacagcggacaatccccctgaagtggagaaagaagaggca
aaccccaccagccctgagaactgctggactgagaaatgcattggacgatgcccttgcctt
gattttgacatcaccacgggcaaaggaaaaacttggtggaacttcaggaagacatgcttc
ctcattgtggagcacaactactttcagtcctttatcatcttcatgatcctgatgagtagt
ggagctttggcttttgaagacatacacattgaacagcgcaggaccataaaagtcatcctg
gaatatgctgatcaattcttcacctacgtgttcattattgagatgctcttgaagtgggtg
gcttacggattccaggcctacttcacaaacgcatggtgctggctggacttcctcattgtg
gatgtgtctatgattagtttaacggctaactttctgggctacgctgaacttggaccaatc
aaatctcttcgaaagttacgggctttgcggcccctccgcgccctgtccagatttgaggga
atgagggtggtggtgaacgctctggtgggggccattccttccatcggcaacgtgcttcta
gtgtgcctcatcttctggctcatcttcagcatcattggagtcaacctgtttgctgggaag
taccactactgcttcaacaccacgtctgaggagctgttctctgctgaagttgtgaacaac
aagaccgaatgcgtccaactaatagaggataatagcgacgtgcgctggatgaactcaaag
atcaactttgacaacgtggccgtgggctacctttccctcctgcaagtagcaacatttaaa
ggatggctggatataatgtatagtgctgtggattcacgtgtggtgggagagcaacccatg
tatgaggataatgtttacatgtacatctactttgtcatgttcgtcatctttgggtccttc
ttcaccctgaatctcttcattggtgtcattatcgacaacttcaaccaacaaaaaaagaag
tttggagggagaaatattttcatgacagaggaacagaataagtactacaatgccatgaaa
aagcttggttccgagaagctacagaaacccattccgagacccaagaacaaattcgcaggc
attatttatgacctgatcacccaacaattcttcgagatcttcatttttgtgctgatctgc
ctcagcatggtaacgatgatggtggacacagatgaccagagcgaggagaaggataaaatc
ctcttcttcatcaacctggtgtttatcttcatcttcatcgcagagtgtatcctcaagttg
atcggactgcggcaatattattttaccgtcggatggaatattttagattttgtcgtcgtc
attctctccatctttggtttactgctggcagacctcatagagaagtattttgtctcacct
aaccttttccgtgtcgtaagactggccaggattggtcgagttctgagacttatccgagga
gctaaaggcatccggacactgttgtttgccctgaggatgtcacttccagctatcttcaac
attgggctcctgctcttcctcgtcatgtttatcttctccatttttggaatgtccaacttg
gcgtatgtcaagaaggaggccggaatagacgatatgatcaattttgaaacttttggcaac
agtatcgtttgtctgttcgtgctcacaacctcagccggttgggatagtatcctctcacgc
atcctgaatagtgcacccccggactgtgacccagacatggaaaatccaggcacagatgta
agaggcaactgcagcagccttgtttggggaatttgttttatctgcagctacatcatcgtg
tgtttctttcttgtggtcaacatgtacattgccattatcctcgagaacttcaatgttgcc
atagaggagagcggcaacccgctgtgtgaggaagactttgagatgttctatgagacctgg
gagaagttcgaccctgacgcgtcacaattcatcgcctacgacattttgtcggagttctgt
gacacgcttaaagacccgctcaggatccccaaacccaacgcaatcaagctgatcaccatg
gaccttcccattgtccctggggataagatccactgtctggacatcctgctggcgctgacc
acagaggtgctgggagaatcaggggagatggatgccatgaaggagagcatggaggagaag
ttcatggccaacaacccctttaaagtgtcatacaagccaatcaccaccaccctgaggcga
aagcagcaggaggtagcagctgttgttattcagagagcctgtcgtaagcatctgctgaga
agttcgatgaaactcgcttcctacaagtaccacgagaagaaagagttaaccaaggaggac
gaagcgccgccagagcaggagggaaagattgccatcaggatgagcaaactgtacggaagc
caacaatcactcggagtggatgaaaccgttgtagatatggattcttatgtaaatcgggag
agaaaagaactgacagcgacacaaccgcctgtggagacgactgaaacgccgccgcctgtg
gagcttcagaacgagatcatctcgcactctgccccctttgtcatcccggcctcaacccat
aactcacagctgaaagagttccatgtttga
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