KEGG   Salvelinus namaycush (lake trout): 120044373
Entry
120044373         CDS       T07522                                 
Name
(RefSeq) H-2 class II histocompatibility antigen, A-Q alpha chain-like
  KO
K06752  MHC class II antigen
Organism
snh  Salvelinus namaycush (lake trout)
Pathway
snh04145  Phagosome
snh04514  Cell adhesion molecules
snh04672  Intestinal immune network for IgA production
snh05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:snh00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    120044373
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    120044373
 09150 Organismal Systems
  09151 Immune system
   04672 Intestinal immune network for IgA production
    120044373
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    120044373
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:snh04147]
    120044373
Exosome [BR:snh04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   120044373
  Exosomal proteins of epithelial cells
   120044373
  Exosomal proteins of breast milk
   120044373
SSDB
Motif
Pfam: C1-set Ig_3 MHC_II_alpha ig C2-set_2 Ig_2 Snurportin1
Other DBs
NCBI-GeneID: 120044373
NCBI-ProteinID: XP_038844927
UniProt: A0A8U0QLX3
LinkDB
Position
Sna3:43320338..43327382
AA seq 265 aa
MSFEMNYSVIILILTGAVCTSAEIHHEIHFIYGCFESSDPAVGLEIDGDEVFYGDFNKNS
NTCLIADVVFTLPTFISITPEDKERACEYATISRVWCKNSIAWGKLSEPRIPKFKDAPES
TIYPRDEVELGVENTLICFVNDFFPPPVKVNWTKNGMEVTEGLSLSRYYPNKDGTFHQFS
RLSFTPQKEDVYICAVAHTALKDPKTREYKVSGSSAGPGPAVFCGVGLTLGLLGVATGIF
FIYKGKRATESQEKRWEVRHWTREI
NT seq 798 nt   +upstreamnt  +downstreamnt
atgagcttcgagatgaactactctgtgattattctgattctcactggagccgtttgcact
tctgcagaaattcatcatgaaattcactttatctacggatgctttgagtcaagtgatcct
gcggtgggacttgagattgatggagatgaagtcttctatggtgacttcaataaaaacagt
aatacatgtctaatagcagatgtagtgtttacattacctacattcatatctattacacca
gaggataaagaaagggcttgtgaatatgctaccattagcagagtttggtgcaaaaacagc
atcgcatggggcaaactgtctgaaccgagaataccaaaattcaaagatgcccctgagagc
accatctaccccagggatgaggtggaactgggagtggagaacaccctcatctgctttgtg
aatgatttctttcccccgcctgtcaaagtcaactggaccaagaatggaatggaggtgact
gagggattatctctcagtcgttactatcctaataaagatggaacgttccaccagttctcc
aggctgagtttcaccccacaaaaggaagacgtctacatctgcgctgtggcgcacacagcc
ctgaaggaccccaaaaccagggaatataaggtcagtgggtccagtgctggtcctggtcct
gctgtattctgtggagtgggcctcactcttgggctgctgggggtggctactggaatattc
ttcatctacaaaggaaagagagccactgagtctcaggaaaaaagatgggaagtgaggcac
tggactagagagatctag

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