Salvelinus namaycush (lake trout): 120045480
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Entry
120045480 CDS
T07522
Name
(RefSeq) oxysterols receptor LXR-alpha-like isoform X1
KO
K08536
liver X receptor alpha
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03320
PPAR signaling pathway
snh04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120045480
09150 Organismal Systems
09152 Endocrine system
03320 PPAR signaling pathway
120045480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120045480
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
snh03310
]
120045480
Transcription factors [BR:
snh03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
120045480
Nuclear receptors [BR:
snh03310
]
1. Thyroid hormone like
1H. Liver X receptor like receptor
120045480
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Motif
Pfam:
Hormone_recep
zf-C4
Motif
Other DBs
NCBI-GeneID:
120045480
NCBI-ProteinID:
XP_038846300
UniProt:
A0A8U0UBZ2
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Position
Sna1:53120098..53144040
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AA seq
478 aa
AA seq
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MSTLSATDITDVGHGEVFDGAPELQLDCLCSGDDRSSAEMKHEGNLLPLEPPDHVGFSSP
PQKGPSSLAEKSSPLPMEPSDIKADPAGSMPANTEGQPVKRKKGPAPKMLGNEVCSVCGD
KASGFHYNVLSCEGCKGFFRRSVIKSAQYSCKNNGRCEMDMYMRRKCQQCRLRKCREAGM
LEQCVLSEEQIRVKKMKKNEEETARTSAVVTPTPVPEVVPLAPEQLEMIEKLVAMQKQCN
KRSFIDRPKVTPWPQSQDPQNREVRQQRFAHFTELAIMSVQEIVDFAKQLPGFLELTRED
QIALLKTSTIEIMLLETSRRYNPAIESITFLKDFSYNKEDFAKAGLQLEFINPIFEFSKG
MNDLHLDEAEYALLIAINIFSAGQRSSGMLVWNRAHMQDRPNVQDHELVERLQQPYVDAL
RSYIMIKRPNDHLMFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLPPLLSEIWDVHE
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgtccacactgtctgcgactgatatcacagatgttggtcatggtgaggtgtttgacggg
gccccagagctgcagctggactgcctctgcagtggtgacgaccgcagcagtgcagaaatg
aagcatgagggcaacctcctccccctggaaccacctgaccatgtagggttttccagcccc
ccccagaaagggccttcctcactagctgagaagagcagcccactgcccatggagcccagc
gacatcaaggccgaccccgccggcagcatgcctgccaatacagagggccagccggtgaag
aggaagaagggtccagcccccaagatgctggggaacgaggtgtgcagcgtgtgcggggac
aaggcctcaggcttccactacaatgtgctgagctgcgagggctgcaagggcttcttccgc
cgcagcgtaatcaagagtgcccagtattcgtgcaagaacaacggccgctgtgagatggac
atgtacatgcgccgcaagtgccagcagtgccggctgcgcaagtgccgtgaagcgggcatg
ctggagcaatgcgttctctcagaggagcagatccgagtgaaaaagatgaagaagaacgaa
gaagagactgcacgcacgtctgcggtggtgacccccaccccggtgccggaggtggtcccg
ctggcgcccgagcagttggagatgatcgagaagctggtggccatgcagaagcagtgcaac
aagcgctcgttcatcgaccggcccaaagtcacgccgtggccccagagtcaggacccccag
aacagggaggtgcggcagcagcgctttgcccacttcactgagctggccatcatgtcggtc
caggagatagtggactttgccaagcagttgcctggcttcctagagctcaccagagaggac
cagattgccctgctgaagacctcaaccattgagatcatgctgctggagacatcgcggaga
tacaaccctgccattgagagcatcacgttcctgaaggacttcagttataacaaggaggat
tttgccaaagcagggctgcagttggagtttatcaaccccatctttgagttctccaaaggc
atgaacgacctgcacctggacgaggcggagtatgctttgctcatcgccattaacatcttc
tctgcaggtcagaggtcaagtggtatgctagtgtggaacagagcccatatgcaagaccgg
cccaatgtgcaggaccatgaactggtggagcgactgcagcagccgtacgtggacgcactt
cgttcttacatcatgataaagagaccaaacgatcacctgatgtttccacgcatgctcatg
aagctggtcagcctccgcaccctcagcagcgtccactctgagcaggtcttcgccctgcgc
ctccaggacaagaagctcccgccgctgctatctgaaatctgggacgtccacgagtga
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