Salvelinus namaycush (lake trout): 120046291
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Entry
120046291 CDS
T07522
Name
(RefSeq) breast cancer type 1 susceptibility protein homolog
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03440
Homologous recombination
snh03460
Fanconi anemia pathway
snh04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120046291
09124 Replication and repair
03440 Homologous recombination
120046291
03460 Fanconi anemia pathway
120046291
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
snh01009
]
120046291
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
snh04121
]
120046291
03036 Chromosome and associated proteins [BR:
snh03036
]
120046291
03400 DNA repair and recombination proteins [BR:
snh03400
]
120046291
Enzymes [BR:
snh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120046291
Protein phosphatases and associated proteins [BR:
snh01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120046291
Ubiquitin system [BR:
snh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120046291
Multi subunit type E3
BRCC complex
120046291
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
120046291
DNA repair and recombination proteins [BR:
snh03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
120046291
BRCA1-A complex
120046291
BRCA1-B complex
120046291
BRCA1-C complex
120046291
BRCA complex
120046291
FA (Fanconi anemia) pathway
Downstream FA components
120046291
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_4
BRCT_2
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
RING_XB3-XBAT31
zf-Nse
zf-RING_5
PTCB-BRCT
YafT
zf-MIZ
zf-ANAPC11
RTT107_BRCT_5
zf-rbx1
TRAF3_RING
zf-RING_4
zf-RING_10
YicC-like_C
Motif
Other DBs
NCBI-GeneID:
120046291
NCBI-ProteinID:
XP_038847307
UniProt:
A0A8U0QPS7
LinkDB
All DBs
Position
Sna4:complement(20192724..20234521)
Genome browser
AA seq
1561 aa
AA seq
DB search
MNTMKTPKAEDVRRGISVIWEILQCPICLELMSTPVSTKCDHQFCKFCIIKLLDSSRRKE
ANCPVCKIKITKRSLQESPGFQKLAEGLQNMVQAYEHDTCTNYFTGMSQMRRHSVTETVQ
KKNGHDVSSDDVWATDRADDEDHEFPMSCSSTIAAKDGFAKLMGLEDSCPVISDEGFDSG
LGDIPPAIEKDTDDSKATSTTEKQKPALEAEIPVVVERAPSRPQKLGKKITTHPQDPPCL
PEKVIDQPVRRSSRNNKRKSLTEMIDQNQKKSLEKVSEWLMNNSSTEENSEKEKITEGSY
DSVSLAGSCSPASPLEDNLRNKDESPKREERGKCLEELVFGAVYKRDRRGNRSFSPQNRA
ITDPPPPCPAEELPILKKIAKRRMSNKLTPADFVKRPRSEENEDSVMDDRPEMTEPQEDS
PNEHPRDTEEDKLIDLTGELNSNSSDKQGEELDELPEGDNKENEDVEDSPVFDVPLRESG
RKPNKKMHGRWQDVDGDLQGKVKSENNEQKKPAKKKGENIKVEKSKAAKSLVLVGVGEGG
IDPKIPKSRPSGQTEVQIESYPSSEDPGSPIMRRTRRSRRLQLFTEEVQGSNKKISTATS
TKVDVLDSDCNKMQQSEEAKADTDRDNVACLQNQNTEKAVRKNGCVLDEEMGGIENLDSS
EKRLCKMIESQKVNPVEESIVEVPSTGSPCHADVACSVTMVPSSISTPEASVSCAVPESV
NQSNPVIKPLDVPQETSASQAKCIDLEEDDRNDSELDTEQLLKSFKATKRKSFHLGSPNI
KRSSFWSNKENTTLTKTQENKHVGTDMEAGNGQGFSRTTECPTVQQESEKRTVFENSCSS
HLSPPSSSLNNISQEKAQRNRKRLRKSILTRPPQDLVESSNPDTSGKTQKQILARLSGNS
SKSALSPNKVTKSQMESPLQAVGSGLLFPAFGASKENLPDPTPVASKQLRVPKSQQPYKV
EGSMRKSPTVLESSHSVGSDTAVEPNKTWPENMTGNMANTESSLTPDDLLPIIQSVVIQV
AERTKGSGVVSLHSPIKSTLKRRKAQRLESSSESDCSGEEEELPSLAQIFRPSACPPTAE
EEEESVTLLKDHAREQGSYREAGDGTCAAAEDGQRASSPPMCPSPEWVTTSQASVDLFGT
PEEGEGMAGDTGLTQESSQFSSECIATQQKVAMQEELRRLERMMALVSEALQEKEEEEPT
GAKVNPGASYPPALLQPDRSTVSSGLDLQATLPCGQGTRKRSASREGPQNIGGNAASPSP
GLGDCEGLGPTPTTPCRTKHEGPGGTGAGRLGRQSGRVLRSSMRARPNQGSSVVRVHSGT
NAPSAGLEVQDTPGAIQPANTHPSTHTPLREPAGVKLVLVASGLSAPEQSMVNKFAKRMG
GSVCSQVTSETTHVIMNTDGDLVCERTLKYFLGIAGRKWVVSFQWISECFKQGTVLNETS
FEVRGDVVNGHDHQGPMRARTTGDTSLLMKDYEICFQGPFTDMTTGQMEWMVELCGATVV
QEPLLFTGELKTRQLIVVQPGSDQSPINYKALQRIATVITRGWLFDTVATYTLQSLGNYR
T
NT seq
4686 nt
NT seq
+upstream
nt +downstream
nt
atgaacaccatgaagaccccgaaggctgaagatgtcagacgggggatttctgtcatctgg
gagatcttgcagtgtccaatatgtttggaattgatgagcacacctgtgtctactaagtgt
gaccaccagttttgcaagttttgcataataaagcttttggacagcagtaggagaaaggag
gccaactgtcctgtttgtaagataaagatcacaaaaaggagtttgcaggagagccctggg
ttccagaaattggccgagggattgcagaatatggtccaggcctatgaacatgacacctgc
acaaactacttcactggaatgtcccagatgaggagacatagtgtcacagagactgtgcag
aagaaaaacggccatgatgtctcatctgatgacgtgtgggccactgaccgtgctgatgac
gaggatcatgagtttccaatgtcctgctcgtcaactatagcagccaaggatggctttgca
aagctcatgggtcttgaagattcttgccctgtcatttcggacgaggggtttgatagcggc
ctaggtgacatacctccagccattgaaaaggataccgatgactctaaagctacctccacc
acagaaaaacagaagccagcattagaggcagaaatacctgtggttgttgaaagagctcct
tcacgaccccaaaagctaggaaaaaagataaccactcatcctcaagatccaccatgcctc
cctgaaaaagtcatagaccaacctgtcagacgatcttcgaggaataacaaaagaaagtcc
ttgactgaaatgattgaccagaatcagaagaaaagtctagagaaagtctctgagtggctc
atgaataattcctcaacagaagaaaactctgagaaggagaaaatcacagagggctcttat
gactcagtttctttggcaggaagttgttcccccgcctcacccttagaggataacctcaga
aataaggacgagagtccaaagagagaagagcgtggcaaatgtcttgaggagctggtattt
ggggctgtttacaaacgggatcgaagagggaaccgcagtttttcaccacagaacagagca
atcacagaccctccaccaccctgtccagctgaggaactcccaatcctgaagaagattgcc
aaaaggaggatgagtaataaactgacacctgctgactttgtcaagagaccaagatctgag
gagaatgaagacagtgttatggatgaccgaccagagatgacagaaccacaagaggattct
cccaatgaacacccaagagatactgaagaagataagttgattgacctgactggggagctg
aactctaatagctctgacaagcaaggtgaagagcttgatgagttgccagaaggtgacaac
aaagagaatgaagatgtagaggacagtcctgtgtttgatgtgccactaagggaatctggg
aggaagccaaataaaaagatgcacggtaggtggcaggacgttgacggggatttacaaggg
aaagtaaagtcggagaataacgagcaaaaaaagcctgccaagaaaaaaggggaaaacatc
aaggtggagaagagcaaggcagccaagtccttagtccttgtgggtgtcggagagggtgga
attgaccctaagatacctaagagcagaccgtcaggccagactgaggttcagattgagagt
taccctagcagtgaggatccaggaagcccgatcatgaggagaaccaggaggagtcggagg
cttcagctcttcacagaggaagtacaagggagtaacaagaagatcagcactgcaacatcc
acaaaggttgacgttcttgattcagactgcaacaagatgcagcaatcagaggaggcgaaa
gctgacactgacagggataatgtggcttgtttgcagaaccaaaatacagaaaaggctgta
aggaaaaacggatgtgttttagatgaagaaatgggaggtattgagaacttggactctagc
gagaaaagattgtgtaaaatgattgagtcacagaaagtgaacccagttgaggagtctatt
gttgaagtcccaagtacaggaagtccttgtcacgctgatgttgcttgttcagtgactatg
gtaccaagttcaattagtactcctgaggcaagtgtctcatgtgccgtgcctgagagtgta
aaccaaagtaatccggttatcaaaccattagatgtaccacaagagacgtcagccagccag
gccaaatgtattgatctggaggaggatgaccggaatgacagtgagctggacactgagcaa
ctgctgaagagcttcaaagccaccaaaaggaagtctttccaccttggtagtccaaatatc
aagaggagttccttctggtccaacaaggaaaatacaactcttacaaagactcaagagaac
aaacatgtcggcacagatatggaagcaggaaatgggcagggattttcaaggacaacggag
tgtcccacagtccaacaggaatctgagaaaaggacagtatttgaaaattcttgctctagt
catttgagcccaccttcaagttccctcaacaatatttcacaagaaaaagcgcagaggaat
cgtaaaaggctcagaaagtccattcttaccagaccacctcaggatttagtggagtcttcg
aaccctgataccagtgggaagacccagaaacagattctggccaggctttctggcaacagc
tcaaaaagtgccctcagtcccaacaaagtcacaaaaagccaaatggaatctcccctccaa
gctgtgggttctggtctgctctttccagcttttggcgcctctaaggaaaatctaccagat
ccgacacctgtagcttcaaagcaacttagagtccctaaaagtcagcagccatacaaagtg
gagggcagcatgaggaaaagtccaacagttctggagagtagccacagtgttggatcagac
actgcagtggagccaaacaaaacgtggccagagaacatgactggaaacatggccaataca
gagtcctccttgactccagatgacctccttccaattatccaatcagtagttatccaagtg
gcagagaggactaaaggaagtggtgtggtcagcttgcactctcccatcaagagcacccta
aagcggaggaaggctcagagactggagtcttcctcggagtccgactgcagtggggaggaa
gaggaactgccttcccttgcgcaaattttcagaccttcggcttgtccaccaaccgctgag
gaggaggaggaatcagtcacattgctcaaagaccatgcgagggaacaaggaagctacagg
gaggctggtgatggtacctgtgctgcagctgaagatgggcagcgagcgagcagtcctccc
atgtgccccagtcctgaatgggtcaccaccagccaggcatctgtggacctgtttggaaca
ccagaagaaggggaaggaatggcaggtgacactggcctgacacaggaatcatcacaattt
tcaagcgagtgcattgccactcagcaaaaggttgcgatgcaggaggagctgcggaggctg
gagagaatgatggcgttggtgtctgaagcgctccaggagaaggaggaggaggagcccact
ggggccaaagtcaaccccggggcctcatatcccccagcgttgcttcaaccagacaggtcc
acagtctcctcaggccttgatctccaggcgaccctgccgtgtggccagggcaccaggaag
aggtctgccagcagggaaggtccccaaaacattgggggaaatgcagcctcaccgtcccct
ggtcttggagactgtgagggccttgggcccacccccaccacgccctgccgcaccaaacat
gaggggcctggagggactggggcagggcggcttggcagacagtcaggacgggtcctaagg
agcagcatgagagcgaggcccaaccaggggtcgtcagtggtcagagtgcacagcgggacc
aatgctccctcagctgggctggaggtccaggataccccgggggccatccagcctgccaac
acacacccatcaacacacactccactgcgggaacccgctggggtcaagttggtgctggta
gcatcaggactcagtgcacctgaacagtcaatggtgaacaagtttgccaagaggatggga
ggcagtgtgtgttcacaagtgacatccgagaccacccatgtcatcatgaacacagatggt
gatctggtgtgtgagcgcacgctcaagtacttcctgggcatcgcaggcaggaagtgggtg
gtgagcttccagtggatttccgagtgcttcaaacaagggacagtcttaaatgagacgtca
tttgaggtgcgaggagacgttgtgaacggacatgatcaccaagggcccatgagagcacgg
accacaggggacacaagtctgctgatgaaggattacgagatctgtttccaaggccctttc
accgatatgaccactggtcagatggagtggatggtggagctttgcggcgcaacggtggtc
caagagcctcttctcttcactggtgaactgaaaactcgtcagctaatagtggtacaacca
ggctcggaccaatcaccaataaactacaaagccctccagaggatagccacggtcattacc
cgtggttggctatttgataccgtggcaacctacacccttcaaagcctcggcaactacaga
acgtaa
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