Salvelinus namaycush (lake trout): 120047970
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Entry
120047970 CDS
T07522
Name
(RefSeq) protocadherin gamma-C5-like
KO
K16497
protocadherin gamma subfamily C
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120047970
Cell adhesion molecules [BR:
snh04515
]
Cadherins
Protocadherins
120047970
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
120047970
NCBI-ProteinID:
XP_038849536
UniProt:
A0A8U0QS23
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Position
Sna5:29981872..29984331
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AA seq
819 aa
AA seq
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MWNRLPVWQVLLWWHHLFLLWSTIDGQTRYTISEELKQGSVVGNLAKDLVLGLSEIYRRK
LRITSEAGKQYFSVDLGKGELVVCERIDREELCGQRVPCILPLEIVIENPLQLHRVDIEI
QDINDNSPSFLTKEKVLKIAESINPGARFPLESALDPDVAANTIRSYSINKNDNFKLNVK
NHKDGSKTPELVLERSLDREKQPVHKLILTAVDGGDPVRSGTSEISIMVLDINDNAPQFE
RQLYEANVNENAAPGTQILRVKATDPDEGLNGKIEYAFGEQTPDSVTALFDIDSSTGVIV
IKRQLNYEQTSLYKFDIVAKDKGNPDMDGHCDVEFKMIDVNDNIPEIIVTSLTTPVPEDS
PIGTVIALIGAKDSDSGDNGKVRLSVSPKSPFKLNPSVSKHYTLVTNAPLNRERYSQYSI
EISASDSGKPPLSSKKTIIVDVLDVNDNPPLFSQPSYTVYVKENYAPGKLLCSVSATDSD
LGDNAKTSYSILESKVQDVSVSSYVYINSDNGSIYSMHSFDYEKLKVFQILVQAMDHGSP
SLSSNATVHVFILDQNDNAPAVIYPSAALGSLSHQKMPRSAKAGYLVTKVTAVDADSGHN
AWISYKLVEATDTSLFSVNLYTGEVRTKRAVSEQDDSSQRLLIDIQDDGVPVQSATVTLA
ILVEDGLHEPILDLRQKTPEPSKKSGRITLYLIISLASVSVLSLVTFVILAVKCVRNSRS
SGSCCMRRDDLDGYKNPNRNLQIQLNTDGPIKYVEVLGEDMLSQSQSFRSYLSPMSEFSD
FTFVKPSSTTDFKEMINVLDASLPDSAWTFESQQVRSDV
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgtggaatagacttcccgtgtggcaggtgctgctatggtggcatcatttatttctcttg
tggagtacaatagacggacagactcgctacaccatctcggaggaactgaaacagggctct
gtggtaggaaatctagccaaagatctggttttgggactatctgagatttatcgtcgtaaa
ttacgaataacctcggaagctggtaagcagtatttcagtgtggatctggggaaaggagag
ctggtcgtctgtgagaggatagacagagaggaactgtgtggacaaagagttccgtgtatt
ttgcctttggagatagtgattgaaaatcccttgcagcttcaccgagttgatattgaaata
caggatatcaatgataattctcccagctttctcaccaaagaaaaagtattaaagattgca
gagtcaataaacccaggagcaagatttccactcgaaagcgcactggatcctgatgtcgct
gcgaatacaatacgctcatacagcattaacaaaaacgacaatttcaaattgaatgtcaaa
aatcacaaggatggtagcaaaaccccagaactggtccttgaaaggtctctcgaccgggag
aagcaacctgttcataagctcattctcaccgctgtagatgggggtgatccagtgcgttca
ggaacctctgagattagtatcatggtacttgatattaatgataacgcaccgcagtttgag
agacaactttatgaggctaatgttaacgaaaatgctgcacctggcactcagattttacga
gtaaaagcgacagacccggacgagggactaaatgggaagatagagtatgcatttggagaa
cagacgccagactcagtgactgcattgtttgatatagattcttcgacaggagtgattgta
ataaaaagacaactcaactatgagcagacgagcttatataaatttgacatcgtcgctaaa
gataaaggcaacccggatatggacgggcattgtgatgttgaatttaaaatgattgatgtt
aatgacaatattccagagataattgtgacgtctctaacgacacctgttccagaagattca
cctatcggaaccgtgatagctttgataggcgctaaagactccgactcgggggacaatggg
aaggtgcggttaagcgtgtcaccaaaatctccattcaagttgaacccgtccgtatccaag
cattacacactggtaactaatgctcctcttaaccgtgagcgttactcgcagtatagtata
gaaatcagtgccagtgattcagggaaaccccctttatccagcaagaaaacaatcattgtt
gatgtgttagatgtgaatgacaatccaccgctgttctctcagccctcgtacacagtgtac
gtgaaagagaattacgcaccagggaaactactatgttcagtctccgccactgattccgac
ctgggggataacgcgaagacctcctactccatcctagagtccaaagtgcaggacgtgtct
gtgtcctcctacgtgtacataaactctgacaacggtagtatctacagcatgcactcgttt
gactatgagaaactaaaggtgtttcagattctggtgcaggccatggaccacggctctccc
tctctgagcagcaacgccacagtccatgtttttatcctggaccagaacgacaatgccccc
gctgttatttacccctccgctgccctgggctcgctctctcaccagaagatgccccgctcc
gctaaagcaggctacctggttactaaggtaacggccgtggacgcagactcgggccataac
gcctggatctcatataaactggtggaggccacagacacgtctctgttcagtgtcaatctt
tacacgggggaggtgaggacgaaacgcgctgtgtccgagcaggacgactcctctcagagg
ctacttatagatatacaggacgacggggtgccagtccagtccgccacggtcacattggcc
atactggtagaggacgggctccacgaacccatcttggatctccggcagaaaactccagaa
cccagtaagaaaagcgggagaatcaccctgtatttgatcatctctctggcctcggtgtcc
gtgctgtctctggtgacttttgtcatcttagcagtcaagtgcgttagaaacagcaggagc
agcggtagttgctgcatgagacgggacgacttggacggctacaagaaccccaacagaaac
ctgcagattcagctcaacactgacgggccgattaagtacgtggaggtcctgggagaggat
atgttgtctcagagtcagtccttcaggtcatatctctctcccatgtcagagttcagtgat
tttaccttcgttaagcccagcagcaccactgactttaaggagatgatcaacgtcctagac
gcgtctttacctgacagcgcctggacctttgagagccagcaggtgagaagtgacgtataa
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