Salvelinus namaycush (lake trout): 120048016
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Entry
120048016 CDS
T07522
Name
(RefSeq) protocadherin gamma-C5-like
KO
K16497
protocadherin gamma subfamily C
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120048016
Cell adhesion molecules [BR:
snh04515
]
Cadherins
Protocadherins
120048016
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
120048016
NCBI-ProteinID:
XP_038849611
UniProt:
A0A8U0QS79
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Position
Sna5:29992527..29995016
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AA seq
824 aa
AA seq
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MTKTIGYRNWRWLALWWRHFILLWSTIDGQTRYTIPEELKQGSVVGNLAKDLGLGLSEIF
DRKLHVASEAGKQYFNVDAGKGELVVNERIDRETLCGKSASCVLPLQVVIENPLQLHRIE
VEIRDINDNSPSFLTKDRVLKMAELTAVGARFPLESAEDPDVGSNSLKSYILSKDECFSV
KVKDIEGGRKIPELVLEKPLDREKKAVHELLLTALDGGIPARSGTSQITVTVLDNNDNNP
VFQKAVYKVRVNENSEKGTSLIKLEATDSDEGVNGEIEYSFGEHTPESVLSVFDIDAVTG
EMFLRGELDYESAASYRIDITAVDKGIPEMEGHCRVQVEVTDVNDNAPEIVLTSKPSPVR
EDAPSGTVVALISARDLDSGNNGKVTLQLTEGHPFSLKPSFSDNYALVTSGVLDRESFSE
YNIEITATDSGSPPLTTKKTITVTIIDVNDNPPKFSQSSYNVYLKENGLPGSMLSSVSTS
DLDFGDNAKISYSILDSKVQDVSVSSYVYINSDNGSIYSMHSFDYEKLKVFQILVQAKDH
GSPSLSSIATVHVFILDQNDNAPAVIYPSAALGSLSHQKMPRSAKAGHLVTKVTAVDADS
GHNAWISYKLVEATDTSLFSVNLYTGEVRTKRAVSEQDDSSQRLLIEIQDDGVPVQSATV
TLAILVEDGLHELILDLRQKAPEPSKKSGRITLYLIISLASVSVLSLVTFVILAVKCVRN
SRSSGSCCMRRDDLDGYKNPNRNLQIQLNTDGPIKYVEVLGGDMLSQSQSFRSCLSPMSE
FSDFTFVKPSSTTDFKEMINVLDASLPDSAWTFESQQVRSDVGL
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagacaattggataccgaaactggagatggctggctctttggtggcgtcatttc
attctcttgtggagtacaatagacggacagactcgctacaccatcccggaggaactgaaa
cagggttctgtggtaggaaatctagccaaagatctgggtttgggactctctgagattttt
gaccgtaagctgcatgtcgcctctgaggctggtaagcagtatttcaatgtggatgcgggg
aagggcgagctggtcgtgaatgagagaatagacagagagactttatgcggaaaaagtgcc
agctgcgttttacctctgcaggttgtcattgaaaacccgttacagttgcaccgtattgag
gtggaaatacgcgacataaatgacaattctcctagtttcttaacaaaagatcgtgttctg
aaaatggctgaattgacagctgtaggcgctcgttttccgttggaaagtgcggaggacccc
gacgtgggaagcaattcacttaaatcctacattcttagtaaagacgaatgtttcagtgta
aaagttaaagacattgaaggaggacgaaaaatcccagagctcgtgttagagaagccactg
gacagagagaaaaaagctgtccacgagctattattgacggctctagatggaggcattccg
gctaggtctggaacttcacagatcacggtcactgtccttgataacaatgacaataatccc
gtatttcagaaagctgtatataaagtacgggttaatgaaaatagcgaaaagggcacttcc
ttgattaagcttgaagctactgactcagacgagggtgtcaacggggagatagaatattca
ttcggcgagcatacaccagagtcggtgttatctgtgtttgatattgatgcagtaacgggg
gaaatgtttctaagaggggaattagattatgagagtgcggcttcttatcgtatagacatt
actgctgtagacaaaggcatcccagaaatggagggacactgtcgggtacaggtagaagta
acagacgttaatgacaatgctcccgaaattgtcctcacctccaaacctagtccagtgcgc
gaggacgcaccgagtggcacggtagtggctttgatcagtgcccgtgacctagactccggg
aataacggtaaagtaacgttacaacttacagaaggccatcctttcagtctgaaaccgtca
ttttctgataattacgcactggtcaccagtggtgttttagacagagagagtttctcagag
tataatattgagataacagccactgattcaggttcccctcccctgactaccaagaaaact
ataacagtcactatcattgatgtcaacgacaacccccctaaattcagccagtcctcatat
aatgtctatttaaaagagaatggactaccaggctccatgctatcctcagtatctacatct
gacctggatttcggggataatgccaagatttcttactccatcttagactccaaagtgcag
gacgtttctgtgtcctcctatgtgtacattaactctgataacggcagcatctacagcatg
cactcgtttgactatgagaaactgaaggtgtttcagattctggtgcaggccaaggaccac
ggctctccatctctgagcagcatcgctactgtccatgtttttatcctggaccagaacgac
aacgcccccgctgttatttacccctccgctgccctgggctccctctctcaccagaagatg
ccccgctccgctaaagcaggccacctggttactaaggtaacggcagtggacgcagactcg
ggccataacgcctggatctcatataaactggtggaggccacagacacgtctctgttcagt
gtcaatctttacacgggggaggtgaggacgaaacgcgctgtgtctgagcaggacgactcc
tctcagaggctgcttatagagatacaggacgacggggtgccggtccagtccgccacggtc
acattggccatactggttgaggatgggctccacgaactcatcttggaccttcggcagaaa
gcgccagagcctagcaagaaaagcgggagaatcaccctgtatttgatcatctctctggcc
tcggtgtccgtgctgtctctggtgacttttgtcatcttagcagtcaaatgcgttagaaac
agcaggagcagcggtagttgctgcatgagacgggacgacttggacggctacaagaacccc
aacagaaacctgcagatccagctcaacactgacgggccaattaagtacgtggaggtcctg
ggaggggatatgttgtctcagagtcagtccttcaggtcctgtctctctcccatgtcagag
ttcagtgattttaccttcgttaagcctagcagcaccactgattttaaggagatgatcaat
gtcctagacgcgtctttacccgacagcgcctggacctttgagagccagcaggtgagaagt
gacgttggcctataa
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