Salvelinus namaycush (lake trout): 120048177
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Entry
120048177 CDS
T07522
Name
(RefSeq) protocadherin gamma-C5-like isoform X1
KO
K16497
protocadherin gamma subfamily C
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120048177
Cell adhesion molecules [BR:
snh04515
]
Cadherins
Protocadherins
120048177
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_tail
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Bact_surface_Ig-like
Motif
Other DBs
NCBI-GeneID:
120048177
NCBI-ProteinID:
XP_038849859
UniProt:
A0A8U0QXP3
LinkDB
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Position
Sna5:29917441..30037076
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AA seq
975 aa
AA seq
DB search
MESRQRKGYGGWPVLRLWFSLACFTGATAQLSYSILEELRPGAVVGNIAKDLGFTVQRII
QRKLRVISESNAQYFEVNHATGYLVIRQTIDREHMCELSSTCSLHLEIVLENPLAIHRVL
VDIVDANDNAPQFSTKNISLEISEAAAPGTRFRLESAHDPDVGINSLRTYHLAPNDCFVL
NVETKSDGSKFPELVLEKALDRETQASFRLLLTAVDGGKPEKSGSTLLLIKILDVNDNAP
VFEEPVKKVSILENVEPGTLVTKLNATDADYGQNGQISFLFSKYTQDRVLKLFSVDSKTG
EIRVNGQVDYETANEYHITVQARDGGTPAMEGSCNIIVDVTDVNDNSPEVTLTSLTSPIR
EDAAPGTVIALISARDLDSGKNGEVTLKVQSGLPFKLNSAFGEHYNLVTDGNLDRETMAE
YTVVIMATDAGSPPLSSRTTFVVKLSDVNDNAPSFSQPSYSVDVPENNDLSTPITMVTAS
DPDTGDNARVSFSILPSMVQGSSISSYVYINPETGHIYSMRSLDHETLNAFRIEVQARDA
GAPPRTANVTVHVFVVDLNDNAPLIVYPPFPQDTGLLLSVPQSAGPGHLITKLVGVDPDS
GHNAWLFYSIAPGPHAGLFRIAPHTGELRTARKLAEEEGGSAYDIIVVVQDNGEPTLSTT
VAITVTVEEKGTSDAATDNRKTSVMRPTGMPDITLYLIISLACVSAVFFLTFLILMVRCL
RHRSDLGGTGCCYSRHRPSRAHHQRPSKDLHLQLNTDGPIRYMEVVGGAQDPPGTRTYRP
CYSTISSRSDFVFVKTPMMSHNNTLSMTLNRKHLMNSAIEQKPPNADWRFTQGQRPGPSG
AGGPPEMAMGTGPWPNPPTEAEQLQALMAAANEVSEATATLGPGTMGLSTRYSPQFTLQH
VPDYRQNVYIPGSTATLTSNPQQQQQQQMLMQQQQMAAQHQALQAQPSEAAAQPEPPKAA
QTPASKKKSTKKEKK
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atggaatccagacagaggaaaggctacggagggtggccagtgctgaggctctggttttct
ctggcgtgctttacgggcgcgaccgcgcagctcagctactctattttggaggagcttaga
cccggggcggtggtcgggaatatcgctaaggatttgggcttcacggttcagaggataatt
cagcgaaaattgcgggtgatctcggaatctaacgcgcagtacttcgaggtaaaccatgcg
actgggtatttggttattagacagacaattgacagggaacacatgtgcgaattaagttca
acatgttcactacatcttgagattgtacttgagaaccctttagcaatacatcgggttctt
gtggatattgtggatgcgaatgacaatgcgccgcagttttccactaagaatatttccttg
gagatatcagaggcggctgcgccgggcactcggttccgactggagagtgcgcacgaccca
gatgtgggtatcaactctctgcgcacttatcacctcgcacccaatgactgctttgttttg
aatgtggaaacgaaaagtgacgggagtaagttcccggaattagttttagagaaggctttg
gatagggagacgcaggcctcgtttcgcctgttgctcaccgcggtagacgggggaaagccc
gagaagtctgggtccactcttttactcataaaaattctggatgtcaatgacaatgcgccc
gtctttgaagagccggtgaaaaaagtgagcattttggagaatgttgaaccgggcacttta
gtaacgaaactgaacgcgaccgatgcggattacggtcagaatgggcagatctccttcctg
tttagtaaatacacgcaggaccgggtgctcaagctattcagcgtggattctaaaaccggg
gagatccgtgtaaatggccaggtggactatgagacagcgaatgaatatcacatcaccgtg
caggccagggatgggggaacccccgccatggagggttcctgtaacatcatagttgacgtc
actgatgtgaatgacaattctccagaggtaacgttgacgtcactgaccagtcccatcaga
gaggacgcagctcctggtacagtcatcgccctcatcagtgcaagggacctggactctggt
aagaatggggaggtgacattaaaggtccagtccggcctgcccttcaaactcaactctgcc
tttggtgagcactacaatctcgtcacggatggcaacctggaccgagagaccatggcagag
tacactgtggtcatcatggcgaccgacgcgggctcccctcccctgtcgtcgcggacgacc
ttcgtggtcaagctctcagatgtgaacgacaacgctccttcattctcccagccctcctac
tcagtggacgtccccgagaacaacgatctcagcacccccatcaccatggtgacggcctct
gacccggacacaggggacaacgcccgcgtctccttctccatcctgcccagcatggttcag
ggctcctccatttcctcctatgtctacatcaacccagagactggacatatctacagcatg
cgttccctagaccacgagaccctcaatgccttccgtatcgaggtgcaggcccgagacgcc
ggggcgccaccccggaccgccaacgtcaccgtgcatgtgttcgtagtggatcttaacgac
aacgcgcccctcatcgtatatccccccttcccccaggacacggggctgctgctgagtgta
ccccagtcggctgggccgggtcatctcattactaaactagtaggggtggaccctgatagt
ggacataacgcttggctgttctactccatcgccccagggccacacgctggtctcttccgc
atcgccccccacactggggagctccgcaccgcccgcaaactagccgaggaggagggcggc
tccgcctatgacatcatcgtggtcgtccaggacaacggcgagcccactctctccaccact
gtggccatcacagtaaccgtggaggagaagggcaccagcgacgccgccacggacaaccgg
aagacgtctgtgatgcgtcccaccggcatgcctgacatcaccctgtacctcatcatctcg
ctggcctgtgtctcggccgtgttcttcctcaccttcctcatcctcatggtgcgatgcctc
cgccaccgcagcgacctcggagggacaggctgctgctacagccgccaccggcccagccgg
gcccaccatcagaggcccagcaaggacctccacctgcagctcaacacagacggacccatc
cgttacatggaggtggtgggaggggctcaggaccccccaggaacacggacctacagaccc
tgctactccaccatctccagccgaagtgactttgtgtttgtcaagacgcccatgatgagt
cacaacaacaccctcagcatgacactcaacaggaagcacctaatgaactcagccattgag
caaaagcctcctaacgccgactggcgcttcacccaaggacagagacctggacccagtggg
gctggaggtccccctgagatggctatgggaacaggaccctggcccaacccccccactgag
gccgagcagctccaagccctgatggccgcagccaacgaagtgagcgaggcgaccgcaacc
ctggggccgggcaccatgggactaagcacccgttacagcccccagttcaccctgcagcac
gtgccggactaccgtcagaacgtctacatccctggcagcaccgccaccttgacctccaac
ccccagcagcagcagcagcagcagatgctgatgcagcagcagcagatggcagcccaacat
caggccctgcaggcccagccctccgaggccgccgctcagcctgaaccccccaaggctgcc
cagacccccgcctccaagaagaagtccaccaagaaggagaagaagtag
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