Salvelinus namaycush (lake trout): 120048189
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Entry
120048189 CDS
T07522
Name
(RefSeq) platelet-derived growth factor receptor beta-like isoform X1
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04010
MAPK signaling pathway
snh04020
Calcium signaling pathway
snh04510
Focal adhesion
snh04540
Gap junction
snh04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
120048189
04020 Calcium signaling pathway
120048189
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120048189
04540 Gap junction
120048189
09142 Cell motility
04810 Regulation of actin cytoskeleton
120048189
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
snh01001
]
120048189
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
snh04090
]
120048189
Enzymes [BR:
snh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
120048189
Protein kinases [BR:
snh01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
120048189
CD molecules [BR:
snh04090
]
Proteins
120048189
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
Ig_2
ig
V-set
C2-set_2
RIFIN
PKD
Ig_VEGFR-1-like_5th
VEGFR-1-like_Ig-like
Haspin_kinase
Motif
Other DBs
NCBI-GeneID:
120048189
NCBI-ProteinID:
XP_038849881
UniProt:
A0A8U0QSQ6
LinkDB
All DBs
Position
Sna5:31138340..31185260
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AA seq
1096 aa
AA seq
DB search
MRSVRVCTLHLTTILTALLHFCPEFCCLEISPSNSEVVMAAGDSMTITCSGWGTVEWRFK
RDDNVPYFGVENQNTTSVLILENVMWSQTGVYVCAEAWTNKTIEVAVFVPDPDVWFIESF
HGMVTKISEEGIIPCVVTNPQINVTLYERDSDMHLKGVYIPSEGYRAPLEDRTYVCRGEL
NGEEKESQAFYVLSIAVPETIDAYINASKTVLKQGEPLTVNCTVQGVDLVSFSWDYPNRD
VDSIEPLTDVLSSQKMRSRLIVSKVTLANTGQYACHVHEGVQDQRATANVNITILEQGFV
ELRSVQDRNVSAQLHQNVELRVEIEAYPPPRVRWTKDDATVNGDNVVITRQEHETRYFST
LTLVRIRTEQKGLYTVHVANGDDTKKLTFDLEVKVPPQITDLSDHHLPGKRHAVTCVAEG
VPSPTIQWFSCDSMLKCSNRSTVWQPLVSDPETLSVQTNVSFNESRKVGQVRSQVIFHKP
QQVSVRCEASNERGLRRRDVKLVSSTFFSQVAVLAAVLALVVIVIISIIILIAVWRKKPR
YEIRWKVIESVSLDGHEYIYVDPIHLPYDLAWEMPRDSLVLGRTLGSGAFGRVVEATAYG
LGHFQSSTKVAVKMLKSTARRSETQALMSELKIMSHLGPHLNIVNLLGACTKQGPLYLVT
EYCRYGDLVDYLHKNKHTFLQYHLEKNQEDSGCRISGGSTPPSQRKGYVSFGSECDGGYM
DMSKDEPTVYVPMQELKDTIKYADIQPSPYESPYQHDHYQEQDQTTMDPALFISDSTTLS
YTDLIGFSYQVAKGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMHDSNYIS
KGSTFLPLKWMAPESIFHNLYTTLSDVWSYGILLWEIFTLGGTPYPDLPMNELFYSALKR
GYRMAKPNHATDEVYEVMQKCWDEKHEKRPEFSFLVHTMGNMLTDSYKKRYCQVNDEFFK
SDHPAVVRTKPRLSSPFPTPAITPSTTPDTLQDLNPCPLTGDFRSEADREEVTTSYNDYI
IPIPDPKPQEEVFSEANSLPMESPASSLALEDDEADSISQETAEADTIPEEEDLHANQAL
IPLESSGTPEVEDSFL
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atgaggagtgtcagagtatgcactctccatctgacaaccattcttacagctcttttacac
ttctgtcctgagttctgttgcctggagatctcccctagcaacagtgaagttgtcatggca
gcgggtgactccatgaccattacctgttccggctgggggacagtcgaatggaggttcaag
cgggatgacaacgttccctattttggagtggagaaccagaacacgaccagtgttctcatt
ctggaaaatgtgatgtggagccaaacgggagtatatgtctgtgccgaggcttggactaac
aagactatagaggtggcagtctttgtgccagaccctgatgtgtggttcattgagagtttc
cacggcatggtgaccaagatcagcgaggaggggatcatcccgtgtgtggtcaccaacccc
cagatcaacgtcaccctctacgaaagagacagtgacatgcacctgaagggggtctacatc
ccaagtgagggctacagggcacccctggaggacaggacctatgtgtgccgaggagagctg
aacggggaggagaaagagtcccaggctttctacgtcttaagcattgctgttccggagacg
atcgacgcctacatcaatgcgtctaagacggtgctgaagcagggcgagcctctgacagtg
aactgcacggtgcagggagtggacctggtctccttctcctgggactatcccaatagagac
gtggactccattgagcctctgactgacgtcctgtcatcccagaagatgcgctcacgcctc
atagtctccaaggtgacgctggccaacacgggccagtacgcgtgtcatgtccacgagggt
gtccaggaccagagagccacagccaacgtcaacatcaccatccttgagcaaggcttcgta
gagctgaggtccgtccaggatcgtaatgtctcggcccagctgcaccagaacgtagagctg
agggtggagattgaagcttacccccctccacgtgtccgctggaccaaagatgatgccacg
gtcaacggggacaacgtcgtaatcaccaggcaggagcatgagaccaggtacttcagcacg
ttgaccctggtgaggatcaggacagaacagaaaggcctctacaccgttcacgtcgccaac
ggagatgacaccaagaaattgacctttgatctagaggtcaaagtcccccctcagatcaca
gacctgtcggaccaccacctccctgggaagaggcatgccgtgacctgtgtggctgagggg
gtaccttcccccaccatccagtggttcagctgtgacagcatgctcaagtgcagtaaccgg
agcacagtgtggcagcccctagtgtcagaccctgagaccctgagcgtccagaccaacgtc
agcttcaacgagagccgtaaggtgggccaggtccgcagccaggtcatcttccacaagccc
cagcaggtgagcgtccgctgcgaggccagcaatgagagaggactccgcaggagggacgtc
aaactggtgtccagcactttcttctcccaggtggcagtgttggctgcggttctagccctg
gtagtcatcgtcatcatctccatcatcatcctcatcgctgtgtggaggaagaagcctcgc
tatgagatcaggtggaaggtgatcgagtcagtgagtctggacggacatgagtacatctac
gttgaccccatccatctgccctatgaccttgcctgggagatgcctcgagacagcctggtg
ctgggtcgtactcttgggtccggagcattcggcagggtggtcgaagcgaccgcgtatggt
ctcggtcatttccagtccagcacgaaagtggcagtgaaaatgctcaaatccacggccagg
aggagtgagacccaggctctaatgtcagagctgaagatcatgagccacctggggcctcac
ctcaacattgtcaacctgctgggggcctgcaccaaacagggccctctctacctggtgaca
gagtactgtcgctatggagacctggtggactacttacacaagaacaagcacacgttcctg
cagtaccaccttgagaagaaccaggaggactctggctgccgcatctctggagggagcacc
cctcccagccagaggaaaggctacgtgtcatttggcagtgagtgtgacggtggttacatg
gacatgagtaaggacgagcccacagtgtacgtccccatgcaggagctgaaagacaccatc
aaatacgctgacatccagccttctccctatgagtctccctatcagcacgaccattaccag
gaacaagaccagaccacaatggaccctgccctgttcatcagtgactctaccaccctcagc
tatactgacctcatcggcttcagctaccaggtggccaaaggcatggagttcctcgcctcc
aagaactgtgtccatcgtgacctggccgccaggaacgtgttgatctgtgaggggaaactg
gtgaagatctgtgactttggcctagccagagacatcatgcacgattccaactacatctcc
aaaggcagcacatttctgcccctgaagtggatggccccagagagtatcttccataacctg
tacaccaccctgagtgacgtgtggtcctacggcatcttgctctgggagatcttcaccctt
ggaggaaccccttaccctgaccttcctatgaatgagctgttctacagtgccttaaagaga
ggctatcgcatggccaaacctaaccacgccacagacgaagtttatgaagtcatgcagaag
tgctgggatgagaagcatgagaagaggccagagttctcctttctggtgcacaccatgggg
aacatgctcactgacagctataaaaagagatactgccaagtcaacgacgagttcttcaag
agtgaccacccggccgtggtccgaaccaaacccaggctctcctcccccttccccacccca
gccatcaccccctccaccacccctgacaccctccaggacctcaacccctgccctctaact
ggagactttagatcggaggcagatagagaggaagtgacgacctcctacaatgactacatc
attcccattccggaccccaagcctcaggaggaagtcttctccgaggccaacagcttgcca
atggaaagccccgcgagctctctggctctggaggatgacgaggctgattccatctcccag
gagacagcagaggcagacaccattccagaagaggaggatctccatgccaaccaggctctg
attccactggaatcttctggaacaccggaagtggaagacagcttcctgtag
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