Salvelinus namaycush (lake trout): 120048774
Help
Entry
120048774 CDS
T07522
Name
(RefSeq) rho guanine nucleotide exchange factor 1-like isoform X1
KO
K12330
Rho guanine nucleotide exchange factor 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04270
Vascular smooth muscle contraction
snh04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
120048774
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
120048774
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
snh04131
]
120048774
Membrane trafficking [BR:
snh04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
120048774
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PH_13
PGDH_C
PH
Motif
Other DBs
NCBI-GeneID:
120048774
NCBI-ProteinID:
XP_038850909
UniProt:
A0A8U0QZR5
LinkDB
All DBs
Position
Sna5:complement(66371722..66440195)
Genome browser
AA seq
1056 aa
AA seq
DB search
MQIKKIRQGKIVHLNLYFRVQCFFPATYDNFRTANHNRRLSVFFLLLLYFEGGAFGAQWS
NPAMSIIGAEDEDFENDLDPTVDDHSSHFTSIELVKSRPTHLLVFLQHVILQFDCSSLLC
YLHADLFKYLSTKETKKQFVEFYNSFLDKGAILRVQIPHNVSFELDRTRPDLLSEEQQRK
FVQDVQLAQAPEVLRQLEDFRQKRMMGMTPNAAELLEVESHYPTDRIPMEMKEKAVAETL
LDKMSEIHPSIVADEEKCSSIFAAVAFYMKHLGVKSRVADSKKSRGFFRRPLGKNKKSEE
STKSKPKGGFPNILSAAGGWIAGSTEVKLPKVEAEVDKEKVNQERKVPSSLVPSRGSSAP
DAAPPALNRKSVSTGSSPHQGLEVSEGSGVHISVTSSPDFSHSEIGLFSSRSDPQLVAEG
GEVSPAGMAGGLAVWEPPSPNEPPLEENLDKDSVDEGVLLPEGVLPGLSLSGPTPQQEEQ
DPRLLELEQDPPNWREHTPPDTLKDLSKKETKRQEVINELFATEHAHVRMLSVLQTVFWK
PLEREELMTATELATIFPSLDEIIDMHYAFYEHLKKLRQHNFIVKAIGTTLLNRFGGTEG
EWFQKLTSRFCSHQTWALEQLKMRQKKDPRFNSFILEAESRPQCRRLQLKDIIPTEMQRL
TKYPLLLENIAKCTEDTLEKESIQQSAECCRKILNHVNEEVKQMENLLTLKDYQRRLDTS
GLKPSNELYLEYKYLDLAQRRMIYEGPLTWRVTKEKTLEVQCVLLGDLLVLLQKQDDKMV
LKCQSKSNIAVQEGKQMLSPIIKLDSAFLREVATDRKAFYVIFTWDSGAQIYELVAQSVG
ERRNWTDVIKMAVDELKKTGPPSDLKRGNSILTGGGNPYSPTTFPQPPLSPTENGGVLLK
NSIERDKNILTDEMKSVDSRHSLIDYLSDKGFDLIGHSNSDQVKVANSALNEVISLKRLL
VGSISLSDNSQPDEENGREVPESQDHGLQGEEGGGMKIEEEGGISAPLVLSQERMEEVRR
KLQSLEVQLKRLQSVEEEHHRLQQALSKFSLEGGNF
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atgcagataaaaaaaatcaggcaagggaaaattgtgcacttgaatttgtacttccgcgta
caatgtttttttccagcgacatacgacaactttcgaacagcgaaccataatagacgtttg
tcagtcttttttttgttgttgctgtattttgaggggggagcgtttggggctcagtggtct
aacccagccatgagcatcatcggggccgaggatgaggactttgagaatgatctggacccc
acggtggatgaccacagcagtcacttcaccagtatagagctagtgaagagccggccaacc
cacctgctggtcttccttcagcacgtcatcctgcagttcgactgttcctccctgttgtgt
tacctccatgctgacctcttcaagtacctcagtaccaaagagaccaagaagcagtttgtg
gagttctacaacagcttcctggacaagggcgctattctcagagtgcaaatccctcacaat
gtatcgtttgagttggaccgtaccagaccagacctgctcagtgaggagcagcagaggaag
tttgtccaggatgtccagttggctcaggccccagaggtgctgcgacagctggaagacttt
aggcagaagaggatgatgggtatgacccctaacgcggcagagctgctggaggtggagtct
cactaccccaccgatcgtatccccatggagatgaaggagaaggccgtggcagagaccctg
ctggacaaaatgtctgagatccatccctccatcgtcgcagacgaggagaaatgttcgtcg
atctttgcagcagtggccttctacatgaagcacctaggagtgaagtccagagtagctgac
agtaagaagtccagagggttcttcaggagaccccttgggaagaataagaagagtgaggag
tccactaaatctaaaccgaaggggggttttcccaacatcctcagcgccgccggtggctgg
attgctggcagcactgaggtcaaacttcctaaagtggaggctgaagtggataaagagaag
gtgaatcaggagcgtaaggttcccagcagcctcgtcccctctcgaggctcctccgcccct
gatgccgcccctccagcattaaacaggaagtctgtttccacaggatcctccccccatcag
ggtttggaggtcagcgagggctcaggggttcacatcagtgtgacctccagcccagacttc
tcccacagcgagataggtctgttcagcagtcgttcggacccccagttggtggcggagggg
ggcgaggtgtcccccgcggggatggcaggggggctggctgtatgggagcccccctcaccc
aatgaaccccccctggaggaaaacctggacaaagacagtgttgatgaaggggtgttactc
cccgagggtgtgctcccaggtctttccctctctggccccaccccccagcaggaggaacag
gaccctcgcctcctggagctggagcaggacccgcccaactggagagaacacaccccccca
gacaccctcaaagacctcagcaagaaggagaccaagcgacaggaggtcatcaacgagttg
tttgcgacggagcacgcccacgtgcgcatgctgagtgttctgcagacagtgttctggaag
cctctggagagagaggaactcatgaccgccacagagctggccaccatcttccccagcctg
gatgagatcatagacatgcactatgctttctatgagcacctgaagaagctgcgtcagcac
aatttcatcgtcaaggccatcggaaccacgttactcaacaggtttggagggacagagggt
gagtggtttcagaagctgacgtctaggttctgtagtcaccagacgtgggccctggaacag
ctgaagatgagacagaagaaagaccctcgtttcaactccttcatactggaggcagagagt
aggcctcagtgtcgtaggctgcagctgaaggacatcatccccactgagatgcagaggctc
accaaataccccctactgctggaaaacattgccaagtgcacagaggacaccttggagaag
gagagtattcagcagagtgcagagtgctgtaggaagatcctcaaccacgtcaacgaggag
gtcaaacagatggagaacctgctgaccctgaaagactaccagcgcaggctggacacctca
ggactcaaacccagtaacgagctgtatctggagtacaagtaccttgacctggcccagaga
aggatgatctatgaggggcctctgacctggagagtgaccaaggagaaaacattagaagtg
cagtgtgtgttgctgggggatctgttggtgctgttacagaagcaggatgataagatggtg
ttgaagtgtcagagtaagagtaacatcgctgttcaggagggcaagcagatgctcagccct
atcataaaactagactctgccttcctccgagaggtggccacagaccgtaaggccttctat
gtgatcttcacctgggacagcggggctcagatctacgaactggtggctcaatctgtcggg
gagaggaggaactggacagatgtgatcaagatggcggtagatgagctgaagaagacagga
cctccatctgacctgaagagaggaaacagcatcttaactggaggaggaaacccatacagc
cccaccacgtttcctcaaccccctctcagccccactgaaaatggaggagtcttgttgaaa
aacagcattgaacgagataagaacatcctgacggatgagatgaagtctgtggactctcgt
cattcgctgattgattacctctcggacaaaggcttcgacttgattggccacagcaacagt
gatcaggtgaaagtggccaatagcgcgttaaacgaagtcatatccctcaagaggctgttg
gttggcagcatcagcctatcagacaactcacagcctgatgaggagaatggaagagaggta
ccagagagccaggaccatggactgcaaggggaggagggtggagggatgaagatagaggag
gagggagggatcagtgctcctctggttctgtcccaggagaggatggaggaggtgcgccgg
aaactgcagagtctggaggtacagctgaagagactgcagagtgttgaggaggagcaccac
aggctgcagcaggccctgtctaagttctccctggaggggggcaacttctag
DBGET
integrated database retrieval system
