Salvelinus namaycush (lake trout): 120056711
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Entry
120056711 CDS
T07522
Name
(RefSeq) protocadherin gamma-C5-like
KO
K16497
protocadherin gamma subfamily C
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120056711
Cell adhesion molecules [BR:
snh04515
]
Cadherins
Protocadherins
120056711
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Cadherin_4
Motif
Other DBs
NCBI-GeneID:
120056711
NCBI-ProteinID:
XP_038860843
UniProt:
A0A8U1C277
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Position
Sna12:39815693..39818272
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AA seq
824 aa
AA seq
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MEQRTMRIRGNLRWQVLWIYQFVLLWNTIEAQIPYTIPEELKEGSVVGNIAKDLGLGISE
IYDRKLRIASDAGKQYFSVDLGKGELVVNKRIDREYLCGENVPCLLPLEVIVENPLQLHR
IEIEIQDINDNSPGFLTNERILNIAEVINPGAKFPLESAHDPDVGANSLRSYSISDNYHF
LLNIKTQGGQKIPELVLKTSLDREKQAVHKLVLTAVDGGTPARSGTSEITVIVLDVNDNE
PQFERPFYEIAVAENRPVGNQIVNVKASDSDEGQNGEIEYFFADQTPESIMALLNVDSNT
GEITIKGHLDYEQTNLHTFDIVAKDKGSPRMEGHCSVKINIADVNDNAPQIIITSLTSPI
PENSAPGMVIALISAKDLDVGENGKVTLNMSRGSPFTLKPSVSNHYALVTNGPLDRETFS
KYDVVIIAVDSGSPPLSTKKTVTVKILDVNDNPPVFSQTSYTVYVKENGTPGSILSSVSA
SDIDMGENAKISYSILDSKVQDVSVSSYIYINSDNGSIYSMHSFDYEKLKVFQIQVQAKD
HGSPSLSSNVTVHVFILDQNDNAPAVIYPSAVMGSVSHQKMPRSAKAGHLTTKISAVDAD
SGHNAWISYRLVEATDSSLFSVNLYTGEVRTKRAVSEQDDSSQRLLIEIQDNGEPVQSAT
VTVNILLEDGLHEPISDFRQKTAEPSKRNSKITFYLIISLASVSVLSLLTFLILVVKCVR
NSRSSSSCCIRRADSDGYKNPNRNLQLQLNTDGPIKYVEVLGGDMLSQSQSFRSCLSPVS
EFSDFTLVKPSSTTDFKDMINVLDASLPDSAWTFESQQVSAATL
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atggaacaaaggacaatgaggattcgaggcaatttgaggtggcaagtgttatggatttat
caatttgttctcctgtggaatacaatagaggcgcagattccatacactatacctgaggag
ttaaaggaaggttctgttgttggaaatatagccaaggacctgggtttgggaatatctgag
atttatgaccgtaaactgaggatagcttctgacgctggtaagcagtatttcagtgtggat
ttgggaaagggtgagctggttgtcaataaaaggatagacagagaatatttatgtggagag
aacgtcccttgtttgttaccgctggaggttatagttgaaaatcccttacagctgcaccgc
attgaaatcgaaatacaggatataaatgataattctccaggttttcttacaaatgaacgc
attttgaatatagctgaggtgattaatccaggtgcaaaattcccattggaaagtgcacat
gatcctgacgtaggcgcaaactcattacggtcctatagtatcagtgataattaccatttc
ctgttgaacataaagactcagggaggccaaaaaatacccgaacttgtgctgaaaacttca
ctggacagagagaagcaggccgttcacaagctcgtgctcaccgcggtagacggggggact
cctgcacgatctggtacttctgaaatcaccgtcatagttcttgatgttaatgataatgag
ccccagtttgagagacctttttatgaaatagctgtagctgagaatagacccgttggcaat
cagattgtaaatgtaaaagcttccgattctgacgaaggacaaaatggagagatcgagtat
ttctttgcagaccagaccccagagagtataatggcattacttaatgttgactcaaatact
ggcgaaattactatcaaaggacatcttgattatgaacagacgaatttgcatacgtttgat
attgtggcaaaagataaaggcagtccacggatggaggggcactgtagtgtaaagatcaat
attgctgatgttaatgataatgcccctcaaattataataacctcactgaccagtccaata
ccggagaattccgcccctgggatggttattgcattgattagcgctaaagacttagacgtt
ggtgagaatggcaaagtaacgttaaacatgtcccggggttccccgttcactctgaagccc
tctgtttccaaccattacgcactggtgaccaacggcccgttagaccgagagacgttctcg
aagtatgatgttgtcattatcgcggttgattcagggtccccacctttatctacaaagaaa
accgttaccgtgaaaatcctagatgtcaatgacaatcctccagtgttttcccagacatcg
tatactgtttatgtcaaagaaaatggaaccccgggatctatactgagctcagtgtccgcc
tctgatatagacatgggtgagaatgcaaagatctcctattctatattagactctaaagta
caagacgtgtctgtctcgtcctatatttacataaactcagataacggcagcatctacagc
atgcactcgtttgactatgagaaactgaaggtgtttcagatacaggtccaggcaaaggac
cacggctctccgtctctgagcagcaacgtcacggttcatgtttttatcctggaccagaac
gacaatgcacccgctgttatttacccatccgctgtcatgggctcggtctcccatcagaag
atgccccggtccgctaaagcaggccacctcaccaccaagatatcggcagtggacgcagac
tcgggccataacgcctggatttcctataggctggtggaggccacagactcgtctctgttc
agtgtgaatctttacacaggggaggtgaggactaaacgcgctgtttcagagcaggatgac
tcctctcagaggctgcttatagagatacaggacaatggggaaccggtccagtccgccaca
gtcacagtcaacatactgttagaggacgggctccacgagcccatctcggacttccgccag
aaaacagcagagcccagcaagagaaacagtaaaatcaccttttatttgatcatctctctg
gcctctgtgtccgttttgtctttgttgacttttctcatcttagtggtgaagtgcgttaga
aacagtaggagcagctcgagttgctgtatcagacgggctgactctgacggatacaagaat
ccaaacagaaacctgcagctccagctcaacactgacggccctattaagtatgtggaggtc
ctgggaggggacatgttgtctcagagccagtccttcaggtcgtgtctctctccagtgtcc
gagttcagtgatttcaccctcgttaagcccagcagcaccacagacttcaaggacatgata
aacgtgcttgatgcatctttaccggacagcgcgtggacgttcgagagccaacaggtgagc
gcagctactttataa
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