Salvelinus namaycush (lake trout): 120056712
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Entry
120056712 CDS
T07522
Name
(RefSeq) protocadherin gamma-C5-like
KO
K16497
protocadherin gamma subfamily C
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120056712
Cell adhesion molecules [BR:
snh04515
]
Cadherins
Protocadherins
120056712
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
120056712
NCBI-ProteinID:
XP_038860844
UniProt:
A0A8U1EJL2
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Position
Sna12:39818919..39821384
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AA seq
821 aa
AA seq
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MRIQMKIKVFLWRRLLLLFLLGNTIEAQTRYTIPEELSVGSVVGNIAMDLGLQVSEISDR
KLRIASEGDKQYFSVDLGRGELIVSERIDRENLCGRNPNCLLPLEALIENPLQLYRVEIE
IQDINDNSPVFQNNQNVLNIAESTIPGVRFRLESAQDPDVGSNSLRSYTLSKNEHFVLDI
KTKKDGSKVPELVLEKVLDREKQSVQSLLLTAVDGGNPARSGTAEITIRVLDNNDNAPVF
EESTYDIQVVENTLPGTVVVTVKAVDLDDGSNSEIVYSFGPHTSESLQDLITVEPQTGEI
KVKGNIDYEKGNSFKFDVLATDKGTPPMQGVCSINVEVIDLNDNSPALILKSQPSPVRED
TPIGTVVALISAKDIDSGDNGEVSLNIAPGLPFSLKPSISNNYALVSDSSFDREKKTEYT
VEIIASDHGKPSLTSRKTITVRVLDVNDNSPVFSQPFYTVYVKENGIPGSLLISVSASDT
DMGENAKISYSILDSKVQDVSVSSYIYINSDNGSIYSMHSFDYEKLKVFQIQVQAKDHGS
PSLSSNVTVHVFILDQNDNAPAVIYPSTVMGSVSHQKMPRSAKAGHLTTKISAVDADSGH
NAWISYRLVEATDSSLFSVNLYTGEVRTKRAVSEQDDSSQRLLIEIQDNGEPVQSATVTV
NILLEDGLHEPISDFRQKTAEPSKRNSKITFYLIISLASVSVLSLLTFLILVVKCVRNSR
SSSSCCIRRADSDGYKNPNRNLQLQLNTDGPIKYVEVLGGDMLSQSQSFRSCLSPVSEFS
DFTLVKPSSTTDFQDMINVLDASLPDSAWTFESQQVSAATL
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgcggattcaaatgaagataaaggttttcctatggcggcggcttctgcttctcttcctc
ctggggaatacaatagaagcgcagacgcgctacaccatcccggaggagctgagtgtggga
tccgttgttgggaatatagcaatggatctgggtttgcaagtgtctgagatttccgatcgt
aaactgaggatagcctccgagggtgataagcagtatttcagtgtggatttgggaagaggc
gagctcattgttagtgagagaatagacagggagaatctgtgtggacgaaatcccaattgt
ctgttacctttggaggctttaattgaaaacccactacagctgtatcgtgttgagatcgaa
attcaggatataaatgacaattccccagttttccaaaacaatcaaaatgttttaaatatt
gcggagtctacaattccaggtgtaagatttcgtttagaatcagcacaagaccccgacgtt
ggctccaattctttacgctcatatacacttagtaaaaatgaacattttgtgttagacata
aaaacaaagaaggatgggtcaaaagtcccagaattggttttagaaaaagtattggacaga
gaaaaacagtccgtacagagcctgcttttgacggccgtagatggtggaaatcctgctaga
tcaggtacagcagaaattactattcgagttctagacaataacgacaatgcacctgtgttt
gaagaaagtacatatgacattcaagtggttgaaaacacattaccaggaacggtcgtcgtc
actgttaaagcagtcgatcttgatgatgggtccaacagtgagatcgtttactcatttgga
ccacacacatcagagtcactacaggaccttataactgtagaaccgcaaactggtgaaata
aaggttaagggaaatatagattatgaaaagggaaattcgtttaaatttgatgttctcgca
acagacaagggcaccccaccaatgcagggcgtatgtagtattaatgtagaagttattgat
ttaaacgacaattccccagctctcattttaaaatcgcagcctagcccggtgagggaagac
acgcctattggaacggttgttgctttgataagtgctaaggacatagactctggagataat
ggtgaagtaagtctgaatatagcgccaggcttacctttttcattaaaaccatcaatttct
aataactacgctttggttagtgattccagtttcgatcgggagaaaaaaacggagtatact
gtcgaaattatagcttctgaccacgggaaaccgtctcttacctccagaaaaacaatcacg
gttcgtgttttagatgtcaatgacaactcgccagtgttttcccagccgttctatactgtg
tatgttaaagaaaatggcatcccgggatctttactgatctcagtgtccgcctctgataca
gacatgggtgagaatgcgaagatctcctattctatattagactctaaagtacaagacgtg
tctgtctcgtcctatatttacataaactcagataacggcagcatctacagcatgcactcg
tttgactatgagaaactgaaggtgtttcagatacaggtccaggcaaaggaccacggctct
ccgtctctgagcagcaacgtcacggttcatgtttttatcctggaccagaacgacaatgct
cccgctgttatttacccttccactgtcatgggctctgtctcccatcagaagatgccccgg
tccgctaaagcaggccacctcaccactaagatatcggcagtggacgcagactcgggccat
aacgcctggatttcctataggctggtggaggccacagactcgtctctgttcagtgtgaat
ctttacacaggggaggtgaggactaaacgcgctgtttcagagcaggatgactcctctcag
aggctgcttatagagatacaggacaatggggaaccggtccagtccgccacagtcacagtc
aacatactgttagaggacgggctccacgagcccatctcggacttccgccagaaaacagcc
gagcccagcaagagaaacagtaaaatcaccttttatttgatcatctctctggcctccgtg
tccgttttgtctttgttgacttttctcatcttagtggtgaagtgcgttagaaacagtagg
agcagctcgagttgctgtatcagacgggctgactctgacggatacaagaatccaaacaga
aacctgcagctccagctcaacactgacggccctattaagtatgtggaggtcctgggaggg
gacatgttgtctcagagccagtccttcaggtcgtgtctctctccagtgtccgagttcagt
gatttcaccctcgttaagcccagcagcaccactgactttcaggacatgataaacgtgctt
gatgcatctttaccggacagcgcttggacgttcgagagccaacaggtgagcgcagctact
ttatga
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