Salvelinus namaycush (lake trout): 120056713
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Entry
120056713 CDS
T07522
Name
(RefSeq) protocadherin gamma-C5-like
KO
K16497
protocadherin gamma subfamily C
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120056713
Cell adhesion molecules [BR:
snh04515
]
Cadherins
Protocadherins
120056713
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
120056713
NCBI-ProteinID:
XP_038860845
UniProt:
A0A8U1BPJ1
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Position
Sna12:39826257..39828914
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AA seq
836 aa
AA seq
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MRILMKIKVFLWRRLLLLFLLGNTIEAQTRYTIPEELSVGSVVGNIANDLGLNLSEISDR
KLRIASEGGKQYFSVDLGKGELVVNERIDRESLCGGNANCLLPLEAIIENPLQLYRVEIE
IQDINDNLPLFQSNRHVLNIAEHTLPGARFRLESAQDPDVGSNSLRTYTLSKNEHFVLDI
KTNKDGSKVSELILEKVLDREKQSVHSLLLTAVDGGNPARSGTAEIIIRVQDINDNAPIF
EESGYDIQVVENTQPGTIVVTVKAVDRDDGVNREIVYSFGPHTSESLQNLLTVDPQTGEI
MVKGEIDYEERNSFKIDVLATDKGIPPMQGLCTINVEIMDLNDNSPEIILKSQPSPVSED
APVGTVIALISAKDVDSGDNGNVKLNIAPGLPFKLKPSVSNNYALVTDTSLDREKNPEYT
VEIKASDSGTPSLNSRKTINVRILDVNDNPPVFSQPSYTVYVRENNAAGSIMCSVSASDP
DIGENAKISYSILDSKVQDVSVSSYIYINSDNGSIYSMHSFDYEKLKVFQIQVQAKDHGS
PSLSSNVTVHVFILDQNDNAPAVIYPSAVMGSVYHQKMPRSAKAGHLATKISAVDADSGH
NAWISYRLVEATDSSLFSVNLYTGEVRTKRAVSEQDDSSQRLLIEIQDNGEPVQSATVTV
NILLEDGLHEPISDFRQKTAEPSKRNSKITFYLIISLASVSVLSSLTFLILVVKCVRNSR
SSSSCCIRRADSDGYKNPNRNLQLQLNTDGPIKYVEVLGGDMLSQSQSFRSCLSPVSEFS
DFTLVKPSSTTDFKDMINVLDASLPDSAWTFESQQVSTIPAQMSVMQIGYTLHSPP
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgaggattctaatgaagataaaggttttcctatggcggcggcttctgcttctcttcctc
ctggggaatacaatagaagcgcagacgcgctacaccatcccggaggagctgagtgtggga
tccgttgttgggaatatagctaacgatctgggtttgaatttgtctgagatttccgatcgt
aaacttagaatagcttccgagggtggtaaacagtatttcagtgtggatttgggaaaaggc
gagctcgttgttaatgagaggatagacagagaaagtctttgtggaggaaatgccaattgt
ctgttgcctttagaggctattatagaaaacccactacagctgtatcgtgttgagatcgaa
attcaggacataaatgacaatttaccactttttcaaagcaatagacatgttttaaatatt
gcggagcacacactaccaggcgcaagatttcgtttagaatcagcacaggaccccgacgtt
ggctccaattctttacgcacatatacacttagtaaaaatgaacattttgtgctagatatt
aaaacaaataaagatgggtcaaaagtatccgaattgattttagaaaaggtattggacaga
gaaaaacagtcagtacacagcctgcttctaacagccgtagatggtgggaatcctgctaga
tcgggcacagcagaaattattattcgggtacaagacataaacgataatgcacccatcttt
gaggaaagtggatatgatatccaagtggttgaaaatacacaaccaggaactatcgttgtc
actgtaaaagcagtcgaccgtgatgatggagtcaatcgtgagatcgtttactcatttgga
ccacacacctcagagtccctacagaaccttttaactgttgatccccaaactggcgaaata
atggttaagggagagatagattatgaagagagaaattcgtttaaaattgatgttcttgcc
acagacaaaggcattccaccaatgcaaggcctatgtactattaatgttgaaattatggat
ttgaatgacaattccccagagatcattttaaagtctcagcctagtcctgttagtgaagac
gcgcctgttggaacagttatagctttgataagtgccaaggacgtagactctggagataat
ggcaacgtcaaattgaatatagcgccaggcttaccatttaaattaaaaccatctgtatct
aacaactacgcgttggttacggacaccagtttggatagagaaaaaaatccagagtacact
gtcgaaattaaagcttctgactccggaacaccgtctctcaactctagaaaaacaattaat
gttcgtattttagatgttaatgacaaccctccagttttctcccaaccttcttacactgtt
tacgtcagagagaacaatgctgctggatcaataatgtgttcagtgtccgcttcagatcca
gatataggtgagaatgcgaagatatcttattctatattagactctaaagtacaagacgtg
tctgtctcctcctatatttacataaactcagataacggcagcatctacagcatgcactcg
tttgactatgagaaactgaaggtgtttcagatacaggtccaggcaaaggaccacggctct
ccgtctctgagcagcaacgtcacggttcatgtttttatcctggaccagaacgacaatgct
cccgctgttatttacccatccgctgtcatgggctctgtctaccatcagaagatgccccgg
tccgctaaagcaggccacctcgccaccaagatatcggcagtggacgcagactcgggccat
aacgcctggatttcctataggctggtggaggccacagactcgtctctgttcagtgtgaat
ctttacacaggggaggtgaggactaaacgcgctgtttcagagcaggatgactcctctcag
aggctgcttatagagatacaggacaatggggaaccggtccagtccgccacagtcacagtc
aacatactgttagaggacgggctccacgagcccatctcggacttccgccagaaaacagca
gagcccagcaagagaaacagtaaaatcaccttttatttgattatctctctggcctctgtg
tccgttttgtcttcgttgacttttctcatcttagtggtgaagtgcgttagaaacagtagg
agcagctcgagttgctgtatcagacgggctgactctgacggatacaagaatccaaacaga
aacctgcagctccagctcaacactgacggccctattaagtatgtggaggtcctgggaggg
gacatgttgtctcagagccagtccttcaggtcgtgtctctctccggtgtccgagttcagt
gatttcaccctcgttaagcccagcagcaccactgactttaaggacatgataaacgtgctt
gatgcatcattacctgacagtgcgtggacgttcgagagccaacaggtgagcacaattcct
gctcaaatgagtgttatgcaaataggctatacgctgcacagcccgccttaa
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