Salvelinus namaycush (lake trout): 120056714
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Entry
120056714 CDS
T07522
Name
(RefSeq) protocadherin gamma-C5-like
KO
K16497
protocadherin gamma subfamily C
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120056714
Cell adhesion molecules [BR:
snh04515
]
Cadherins
Protocadherins
120056714
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
He_PIG
Motif
Other DBs
NCBI-GeneID:
120056714
NCBI-ProteinID:
XP_038860846
UniProt:
A0A8U1BUC8
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Position
Sna12:39829712..39834950
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AA seq
817 aa
AA seq
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MGILGMKILHKRAFWLFFLLWNTIQAQIRYTIPEELKEGAVVGNIAEDLGLKASEIFVRK
LRIASEAGKQYFSVDLRRGELVVNERIDRENLCGQSASCLLPLQVVIEEPLQLYRVEVEV
QDINDNGPIFLSTERVLNVAESTTSGARFLLTSAKDPDVGSNSLSSYKLNKNDFFSLNVK
TNKDGTKIPELLLQKALDREKQAVHHLVLTAIDGGNPARSGTTDVTVQVLDINDNAPIFE
KSLYECSLLENSPKSTVVIIVKAGDTDEGANGAMQYTFAEQTPDFIHEMFSIDSESGQIT
VTGNLDYEESHTYEFNVRATDKGIPAMEGHCSIRVEILDVNDNAPEIVLTSSPNPVKEDA
SLGTVVALIGAKDLDSVENGKVSLSLIGEHPFKLKPSYADNYAILTDSELDRELFSEYKL
TIVAFDSGSPPLTSKKEVIVRVLDVNDNPPVFSQPSYTVYVRENNAAGSIMCSVSASDPD
IGENAKISYSILDSKVQDVSVSSYIYINSDNGSIYSMHSFDYEKLKVFQIQVQAKDRGSP
SLSSNVTVHVFILDQNDNAPAVIYPSTVMGSVSHQKMPRSAKAGHLATKISAVDADSGHN
AWISYRLVEATDSSLFSVNLYTGEVRTKRAVSEQDDSSQRLLIEIQDNGEPAQSATVTVN
ILLEDGLHEPISDFRQKTPEPSKRNSKITFYLIISLASVSVLSLLTFLILVVKCVRNSRS
SSSCCIRRADSDGYKNPNRNLQLQLNTDGPIKYVEVLGGDMLSQSQSFRSCLSPVSEFSD
FTLVKPSSTTDFKDMINVLDASLPDSAWTFESQQSCS
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atggggattttagggatgaagattctgcataaacgggcgttctggctattctttctgcta
tggaatacaatacaggctcagatccgctacactattccagaggaattgaaagaaggagct
gttgttgggaatatagcagaggatcttggtttgaaagcgtctgagatttttgtgcgtaaa
ctaaggatcgcctccgaggctggtaagcaatatttcagtgtggatttgaggagaggcgag
ttggttgtcaacgagaggatcgacagagagaatttgtgcggacaaagcgccagttgtcta
ttaccactgcaggttgttattgaggagccgctccagctttaccgcgttgaggtggaagtc
caggatattaatgataatgggccaatctttttgtctactgaacgtgttcttaatgttgca
gaatccacaacatccggagctcggtttctacttaccagtgcgaaggaccctgacgtggga
tccaattccctcagttcatacaaattaaataaaaatgactttttttcattaaatgttaag
accaataaagatggaacgaaaataccagagttacttttacaaaaagcactagacagagag
aaacaggccgttcatcatcttgtgctgacagcaatagatggtggcaatccggcccgatca
ggtactacggatgtcactgttcaagttttagatatcaatgacaatgctccaatctttgag
aaatcgctttatgaatgttctttactagagaattcacccaaaagtacagtggtcataatc
gtcaaagccggtgatactgacgagggtgctaacggagcgatgcaatacacgttcgctgag
caaacgccagacttcatacatgaaatgttttccattgactctgagtctggacagatcact
gtgactggcaatttggattatgaagagagtcacacttatgaatttaatgtacgcgctaca
gacaaaggaattcccgctatggaaggccactgctctattcgggtagagattttagacgtg
aatgataatgcacctgaaattgtccttacctcgtcacctaacccagtgaaagaagatgct
tctttaggaacagttgttgctttgataggtgcaaaagatcttgattcggtggaaaatggg
aaggtcagtttgagtttaataggcgaacatccatttaaattgaaaccgtcgtatgcagat
aattatgctatactaacagactctgaactcgaccgggagctattttctgaatataaactg
acaattgtcgcctttgattcgggttctcctcccctcacttcaaaaaaagaggtaattgta
agagttttggacgttaatgacaaccctccagttttttcccagccctcttacactgtttac
gtcagagagaacaatgctgctggatcaataatgtgttcagtgtccgcttcagatccagat
ataggagagaatgcgaagatatcttattctatattagactctaaagtacaagacgtgtct
gtctcctcctatatttacataaactcagataacggcagcatctacagcatgcactcgttt
gactatgagaaactgaaggtgtttcagatacaggtccaggcaaaggaccgcggctctccg
tctctgagcagcaacgtcacggttcatgtttttatcctggaccagaacgacaatgctccc
gctgttatttacccatccactgtcatgggctcggtctcccatcagaagatgccccggtcc
gctaaagcaggccacctcgccactaagatatcggcagtggacgcagactcgggtcataac
gcctggatttcctataggctggtggaggccacagactcgtctctgttcagtgtaaatctt
tacacaggggaggtgaggactaaacgcgctgtttcagagcaggatgactcctctcagagg
ctgcttatagagatacaggacaatggggaaccggcccagtctgccacagtcacagtcaac
atactgttagaggacgggctccacgagcccatctcggacttccgccagaaaacacccgag
cccagcaagagaaacagtaaaatcaccttttatttgatcatctctctggcctcagtgtcc
gttttgtctttgttgacttttctcatcttagtggtgaagtgcgttagaaacagtaggagc
agctcgagttgctgtatcagacgggctgactctgacggatacaagaatccaaacagaaac
ctgcagctccagctcaacactgacggccctattaagtatgtggaggtcctgggaggggac
atgttgtctcagagccagtccttcaggtcgtgtctctctccagtgtccgagttcagtgat
ttcaccctcgtcaagcccagcagcaccactgactttaaggacatgataaacgtgcttgat
gcatcattacctgacagtgcatggactttcgagagccaacagagctgctcctaa
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