Salvelinus namaycush (lake trout): 120056715
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Entry
120056715 CDS
T07522
Name
(RefSeq) protocadherin gamma-C5-like
KO
K16497
protocadherin gamma subfamily C
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120056715
Cell adhesion molecules [BR:
snh04515
]
Cadherins
Protocadherins
120056715
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
TOC159_MAD
Motif
Other DBs
NCBI-GeneID:
120056715
NCBI-ProteinID:
XP_038860847
UniProt:
A0A8U1ET80
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Position
Sna12:39835205..39837782
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AA seq
817 aa
AA seq
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MWTLVKIKIFPWLALWMFFLLWNTIEAQTRYTIPEELDAGSVVGNIAKDLGFDIAKISDR
KLRIAPGAGKAYFAVDLGKGELIVNERIDRESLCGQSASCLLPLQVIIEDPLQFYRVEVE
ILDINDNSPRFKSDENTVNVAESTLPGARIPLETAQDPDVGANMLRSYTLNTNDFFKLNV
KNSRDGTKIPELVLENAVDREKQSVHHLILTAFDGGSPARLGIAKFTVIVLDNNDNAPSF
EQDLYEIHLSENTNPGTLVLTVKADDLDEGSNSAIVYSFGSQTPDDVQKRFAIDQETGEI
TLSHELDYEIGPSYKFDVCARDKGTPSMEGHSDVQVTVIDVNDNSPEITITSSPKPVRED
APVGTMVALISAKDLDSGENGQVSLRMSSDYPFKLNPSFADHYALVTHATLDREKYPEYR
IELEASDSGSPALTSNKIITVNILDVNDNPPVFSQPSYTVYVRENNAAGSIMCSVSASDP
DIGENAKISYSILDSKVQDVSVSSYIYINSDNGSIYSMHSFDYEKLKVFQIQVQAKDHGS
PSLSSNVTVHVFILDQNDNAPAVIYPSTVMGSVSHQKMPRSAKAGHLTTKISAVDADSGH
NAWISYRLVEATDSSLFSVNLYTGEVRTKRAVSEQDDSSQRLLIGIQDNGEPVQSATVTV
NILLEDGLHEPISDFRQKTAEPSKRNSKITFYLIISLASVSVLSLLTFLILVVKCVRNSR
SSSSCCIRRADSDGYKNPNRNLQLQLNTDGPIKYVEVLGGDMLSQSQSFRSCLSPVSEFS
DFTLVKPSSTTDFKDMINVLDASLPDSAWTFESQQWC
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgtggacgctagtcaagattaagatttttccatggctggcactatggatgttctttctc
ttgtggaatacaatagaggcgcagactcgatacaccattcccgaggaactggacgcgggc
tctgttgttggaaatatagctaaggacttgggctttgacatcgctaagatctctgatcgc
aaactgaggatagcccccggggctggtaaggcatatttcgctgtggatttgggaaagggc
gagctcattgtaaatgaacggatagacagagagagtctgtgcggacaaagcgcgagttgt
ttgttacctctgcaggttatcattgaggatccacttcagttttatcgagttgaggttgaa
atactggatataaatgacaactctccacgtttcaagtcagatgaaaacacagtaaatgtg
gcggaatcaactctaccaggggcaagaattccgttggaaacggcacaggacccggatgtt
ggagcaaatatgctgcgctcttacaccttgaatacaaacgacttcttcaagttgaatgtt
aagaatagcagagacggaacaaagattcctgaacttgttcttgaaaatgccgttgacaga
gagaaacagtcggtccaccatctcattcttacagcatttgatggaggttctcctgctaga
ttgggaatagcgaaatttacagttatcgttttagataacaatgacaacgcaccaagtttt
gagcaagacttgtatgagatccatcttagtgaaaataccaatcctggaacgttagtattg
actgttaaagctgacgatttagatgagggctctaacagtgctatagtttattcattcggg
tcacaaacaccagatgacgtgcaaaaacgttttgctatcgaccaagagacaggagaaata
acattgtcacacgagttagattacgaaattggtccctcttacaaatttgatgtatgtgcg
agagacaaaggcacgccatctatggaggggcacagcgatgttcaggtgacggttatagat
gttaatgataactcacctgagataaccatcacctcctcacccaaacccgttagagaggat
gccccagtagggaccatggtagctctaattagtgcaaaggatttggactcgggagaaaat
ggtcaagtttcccttcgtatgtcttcagattaccctttcaaattaaacccctcatttgca
gatcattacgcactagtaacacatgcaactttagaccgggagaaatatcctgaataccgt
attgagcttgaagcatcggactcagggtccccagctttgacctcgaataaaatcataacg
gttaatattttagatgttaatgacaaccctccagttttctcccaaccttcttacactgtt
tacgtcagagagaacaatgctgctggatcaataatgtgttcagtgtccgcttcagatcca
gatataggagagaatgcgaagatatcctattctatattagactctaaagtacaagacgtg
tctgtctcctcctatatttatataaactcggataacggcagcatctacagtatgcactcg
tttgactatgagaaactgaaggtgtttcagatacaggtccaggcaaaggaccacggctct
ccgtctctgagcagcaacgtcacggttcatgtttttatcctggaccagaacgacaatgca
cccgctgttatttacccttccactgtcatgggctctgtctcccatcagaagatgccccgg
tccgctaaagcaggccacctcaccactaagatatcggcagtggacgcagactcgggtcat
aacgcctggatttcctataggctggtggaggccacagactcgtctctgttcagtgtgaat
ctttacacaggggaggtgaggacaaaacgcgctgtttcagagcaggatgactcctctcag
aggctgcttatagggatacaggacaatggggaaccggtccagtctgccacagtcacagtc
aacatactgttagaggacgggctccacgagcccatctcggacttccgccagaaaacagca
gagcccagcaagagaaacagtaaaatcaccttttatttgatcatctctctggcctctgtg
tccgttttgtctttgttgacttttctcatcttagtggtgaaatgcgttagaaacagcagg
agcagctcgagttgctgtatcagacgggctgactctgacggatacaagaatccaaacaga
aacctgcagctccagctcaacactgacggccctattaagtatgtggaggtcctgggaggg
gacatgttgtctcagagccagtccttcaggtcgtgtctctctccagtgtccgagttcagt
gatttcaccctcgttaagcccagcagcaccactgactttaaggacatgataaacgtgctt
gatgcatcattacctgacagtgcgtggacgttcgagagccagcagtggtgctga
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