Salvelinus namaycush (lake trout): 120056716
Help
Entry
120056716 CDS
T07522
Name
(RefSeq) protocadherin gamma-C5-like
KO
K16497
protocadherin gamma subfamily C
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120056716
Cell adhesion molecules [BR:
snh04515
]
Cadherins
Protocadherins
120056716
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
TOC159_MAD
Motif
Other DBs
NCBI-GeneID:
120056716
NCBI-ProteinID:
XP_038860848
UniProt:
A0A8U1EP38
LinkDB
All DBs
Position
Sna12:39841452..39843917
Genome browser
AA seq
821 aa
AA seq
DB search
MWTLVKIKIFPWLALWMFFLLWNTIEAQTRYTIPEELDVGSVVGNIAKDLGFDIAKISDR
KLRIAPGAGKQYFAVDLGKGELIVNERIDRESLCGQSASCLLPLQVIIEDPLQFYRVEVE
ILDINDNSPLFMSGENTIKVPESTLSGVRFRLETAQDRDVGINYLRSYSLNKNDFFALNV
KNNKDGTKVAELVLEKTVDREQQPVHNLILTAVDGGTPARSGTTHVTVMVIDINDNAPSF
DQDLYEIQLSENAIPGALVLTVRANDLDEGPNSKIEYSFESHTAESIQKLFVINEDTGAI
TLTDALDYEKSPSYKFDVCARDKGTPSMEAHSSVQVTIVDVNDNSPEITITSSPKPVRED
APVGTMVALISAKDLDSGENGQVSLRMSSDYPFKLNPSFADHYALVTHSTLDREKYPEYR
IELEASDSGSPALTSIKIITVNILDVNDNPPVFSQPSYTVYVRENNAAGSIMCSVSASDP
DKGENAKISYSILDSKVQDVSVSSYIYINSDNGSIYSMHSFDYEKLKVFQIQVQAKDHGS
PSLNSNVKVHVFILDQNDNAPAVIYPSTVMGSVSHQKMPRSAKAGHLATKISAVDADSGH
NAWISYRLVEATDSSLFSVNLYTGEVRTKRAVSEQDDSSQRLLIEIQDNGEPVQSATVTV
NILLEDGLHEPISDFRQKTVEPSKRNSKITFYLIISLASVSVLSLLTFLILVVKCVRNSR
SSSSCCIRRADSDGYKNPNRNLQLQLNTDGPIKYVEVLGGDMLSQSQSFRSCLSPVSEFS
DFTLVKPSSTTDFQDMINVLDASLPDSAWTFESQQVSAATL
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgtggacgctagtcaagattaagatttttccatggctggcactatggatgttctttctc
ttgtggaatacaatagaggcgcagactcgatacaccattcccgaggaactggacgtgggc
tctgttgttggaaatatagctaaggacttgggctttgacatcgctaagatctctgatcgc
aaactgaggatagcccccggggctggtaagcaatatttcgctgtggatttgggaaagggc
gagctcattgtaaatgaaaggatagacagagagagtctgtgcggacaaagcgcgagttgt
ttgttaccactacaggttatcattgaggatccacttcagttttatcgtgttgaggtggaa
atactggatataaatgacaattctccacttttcatgtcaggcgagaacactataaaagtg
cccgaatcaactctatctggtgttcggtttcgtttggaaacggcacaggaccgtgacgtc
gggataaattatttgcgctcatattctctgaataaaaatgacttctttgctttgaacgtt
aaaaacaataaagacggcacaaaggttgccgagcttgttctggaaaagactgttgaccgg
gaacagcagccggtgcacaacctaattcttactgcggttgatggaggtactccggcaaga
tctggaaccacgcatgttactgtgatggtgatagacataaacgacaatgcgcctagtttt
gaccaagacttgtatgaaatccaactgagtgaaaatgcaatacccggggcattagtattg
acagttagagccaacgacttggatgaaggcccaaacagtaaaatagagtattcattcgaa
tcgcatacagcagagtccattcaaaagctatttgtaatcaatgaagacacaggagctatt
actttaaccgacgcattagattacgaaaaaagtccttcatataaatttgatgtatgcgct
agagacaaaggcacgccatctatggaggcacacagtagtgtccaggtaaccattgtagat
gttaatgataactcacctgagataaccatcacctcctcacccaaacccgttagagaggat
gccccagtaggtaccatggtagctctaattagtgcaaaggatttggactcgggagaaaat
ggtcaagtttcccttcgtatgtcttcagattaccctttcaaattaaacccctcatttgca
gatcattacgcactagtaacacattcaactttagaccgggagaaatatcctgaataccgt
attgagcttgaagcatcggactcagggtccccagctttgacctccattaaaataataaca
gttaatattttagatgttaatgacaaccctccagttttttcccaaccttcttacactgtt
tacgtcagagagaacaatgctgctggatcaataatgtgttcagtgtccgcttcagatcca
gataaaggagagaatgcgaagatatcctattctatattagactctaaagtacaagacgtg
tctgtctcctcctatatttacataaactcggataacggcagcatctacagcatgcactcg
tttgactatgagaaactgaaggtgtttcagatacaggtccaggcaaaggaccacggctct
ccgtctctgaacagcaacgtcaaggttcatgtttttatcctggaccagaacgacaatgct
cccgctgttatttacccttccactgtcatgggctctgtctcccatcagaagatgccccgg
tccgctaaagcaggccacctcgccactaagatatcggcagtggacgcagactcgggtcat
aacgcctggatttcctataggctggtggaggccacagactcgtctctgttcagtgtgaat
ctttacacaggggaggtgaggactaaacgcgctgtttcagagcaggatgactcctctcag
aggctgcttatagagatacaggacaatggggaaccggtccagtccgccacagtcacagtc
aacatactgttagaggacgggctccacgagcccatctcggacttccgccagaaaacagta
gagcccagcaagagaaacagtaaaatcaccttttatttgatcatctctctggcctctgtg
tccgttttgtctttgttgacttttctcatcttagtggtgaagtgcgttagaaacagtagg
agcagctcgagttgctgtatcagacgggctgactctgacggatacaagaatccaaacaga
aacctgcagctccagctcaacactgacggccctattaagtatgtggaggtcctgggaggg
gacatgttgtctcagagccagtccttcaggtcgtgtctctctccagtgtcagagttcagt
gatttcaccctcgtcaagcccagcagcaccactgactttcaggacatgataaacgtgctt
gatgcgtctttaccggacagcgcgtggacgttcgagagccaacaggtgagcgcagctact
ttataa
DBGET
integrated database retrieval system