Salvelinus namaycush (lake trout): 120061553
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Entry
120061553 CDS
T07522
Name
(RefSeq) voltage-dependent L-type calcium channel subunit alpha-1D-like
KO
K04853
voltage-dependent calcium channel L type alpha-1F
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04010
MAPK signaling pathway
snh04020
Calcium signaling pathway
snh04260
Cardiac muscle contraction
snh04261
Adrenergic signaling in cardiomyocytes
snh04270
Vascular smooth muscle contraction
snh04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
120061553
04020 Calcium signaling pathway
120061553
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
120061553
09153 Circulatory system
04260 Cardiac muscle contraction
120061553
04261 Adrenergic signaling in cardiomyocytes
120061553
04270 Vascular smooth muscle contraction
120061553
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
snh04040
]
120061553
Ion channels [BR:
snh04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
120061553
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
CAC1F_C
GPHH
Ca_chan_IQ
PKD_channel
Motif
Other DBs
NCBI-GeneID:
120061553
NCBI-ProteinID:
XP_038867396
UniProt:
A0A8U1F0G9
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Position
Sna16:complement(20204537..20235736)
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AA seq
2102 aa
AA seq
DB search
MAGKEDGVSLAGSVAGDKSDTLGSAASGKKRGGGQKKQIQANKSALRAPRALCCLTLSNP
IRMAALALVEWKYPSMMIPFDIFILLAIFANCVALGVSKPFPEEDSNSTNHNLEQVEYVF
LVIFTIETFTKILAYGLVMHPSAYIRSGWNLLDFVIVVVGLFSVVAEGTADHKPGEAHHA
AGKPGGLDVKALRAFRVLRPLRLVSGVPSLQIVLNSIMKAMVPLLHIGLLVMFVIIIYAI
IGLELFLGRMHKTCFYLGTELNVDDDPTPCAFAGNGRNCVGNGTECRGPWEGPNGGITNF
DNIFFAMLTVFQCITMEGWTDVLYWMNDAIGFEIPWVYFVSLVIFGSFFVLNLVLGVLSG
EFSKEREKAVARGELQDAQNKKQMEEDMCGYMDWLIEAEDVDEEGNKRMPVFDPSAPHIT
CLLSLTSLSEQLCQLNHAFRKNCRVAVKSQNFYWLVLLLVFLNTAASASEHYGQPKWLTE
MQERANKILLMLFTLEMLLKMYSFGFQIHFMALFNRFDCFVVCGGILETVLVELQIIPPI
GISVLRCVRLLRVFKVTRHWAALSNLVNSLLNSMKAICSLLLLLFLFLIIFSLLGMQLFG
GKFNFDETQMKRSTFDTFPQALLTCFQILTGEDWNAVMYDGIMAYGGPVFPQMIVCVYFV
SLFVVGNYILLNVFLAIAVDNLAGGDGGKKQVEEKKDDEEDWDEDEDKEEDAANEMDDWE
ENEELRAIEGLEGIMPVKPESAPKEKIEPIPDGSSFFILGKRNCLRVACHNLIHHSYFTN
LILVFIIASSISLAAEDPIRAHSFRNNMLGYADYAFTSIFTVEIILKVTVFGAFLHPGSF
CRNAFNLLDLLVVSVSLASFFLHSSAISVVKIFRVLKVLRPLRAINRAKGLKNVVQCVFV
AIKTIGNILIVTTLLQFMFACIGVQLFKGRFYSCTDEAKHTPYECMGTFVVYKDGDMNHP
MVRERKWQNSEFNFDNVLQGMLALFTVSTFEGWPQLLYKAIDANAANHGPIYNYRVEISI
FFIIYIIIIAFFMMNIFVGFVIITFREQGESEFKNCELNKNQRQCVQYALKAKPIKIYIP
RNPSQLKFWKIIASSQFEYIMFVLILLNTLTLAVQHYEQSKTFNSVMDMLNLIFTALFTI
EMVIKLLALRTHQYFIDAWNSFDALIVVGSVLDIVVSELSAIEAAAQAAAVAVPGAPPGA
KKESGKVSITFFRLFRVLRLVKLLSKGEGIRTLLWTFVKSLQALPYVGLLIAMIFFIYAV
IGMQTFGKIAIDDNSHINRNNNFQTFFMSVLLLFRCATGEQWQEIMLAALPGRPCDPESD
FEPGDDNMCGSNLAYIYFISFFMLCAFLIINLFIAVIMDNFEYLTRDWTVLGTHHLDEFK
RVWSDYDPEATGRIKHIDVVTMLRRIQPPLGFGKLCPHRVACKRLVAMNVPLHSDGTVTF
NATLFALVRTSLKIKTEGPVDQDNEELRAIIKKIWKRTKPKLLEEVIPPPRGEEVTCGKF
YASFLIQDYFKKFRKRKERERKKKGKDKKDSLQAGLRSLQALAPELHLALAMEGEDEEGV
EGELDEEFFKNDNVFEDPGTSATSTPSTTHMPADIEEGTTTIFMEPFVEPTISSNVVTEQ
PLSVSEKPESALSSFDVVMEQPTRSEAIPPPEDTPSPPQPAPAASPPKDPSPPQPAPAAN
PPNAPSQPQPAPVASSPNVASPPQVVTQSPPQIVLAPPEPEAPQIVLEAAPAPPQPEPLM
EGRGGETSTTQQVYYPQYPVGMPTNNGHVYQEQPVASPIPSEYMQSPTPNFTNGRAAGVP
YANGNGMNGNIYNGGTNGGSVNGDSITGSSMSGYTGNGYNGNGYNGNGYNGNGNGLEQYV
RRRVLPPTPAGRKPPSFNIQCLRAQHSADDIPIPGTYESNSPPCRSRLTLDSRRSSASSM
SSASWANNGGGHAGLTPGAGVSAASAAAAKRGRLLYAPLMLVDEARGTKQVWGDRTQATS
SLPAIATRPSGWYPGAPTLPVPTPQNRSYTNGRVPSQISQSLIEKGSADSLVESILISEG
LGLYARDPKFVNFAKREIADACNMTIDEMENAATDLLTRSAGQPIGRFEEELADEMNCVI
SY
NT seq
6309 nt
NT seq
+upstream
nt +downstream
nt
atggcaggaaaagaggatggcgtctccttggccggctcggttgccggggacaagtccgac
accctcggctctgctgcctcgggcaagaagaggggtggtggacagaagaagcagatacaa
gccaacaaatctgctctccgagcccctcgagctctctgctgcctcaccctcagtaacccc
attcgcatggctgccttagcccttgttgaatggaaatatccttcaatgatgatacctttt
gatatcttcattctacttgctatatttgccaactgtgtggccctgggtgtatctaaaccc
ttccctgaggaggactccaattccaccaaccacaacctggaacaagtagagtatgtcttc
ctggtcatcttcaccattgaaaccttcactaagatcctggcctatggcttggtcatgcac
cctagcgcctacatccgcagtggctggaatttgcttgattttgtcatcgttgtcgtcggg
ttgttcagtgtggttgctgaggggacggccgaccacaagcctggagaggcccaccacgca
gcaggcaaaccaggaggactggatgtcaaagcgctcagagccttcagggtgctgcgaccc
cttaggctggtgtctggcgtacccagtctccagattgtcttgaattccatcatgaaggcc
atggttcccctactccacattggtctgctggtcatgtttgtcatcatcatctatgccatc
atcggcctggagctcttcctcggcaggatgcacaagacctgtttctacttgggcacagaa
ctgaacgtggatgatgaccccacaccgtgtgcgtttgctgggaatgggcgcaattgtgtg
ggcaatgggacagagtgcagaggaccgtgggaggggcctaatggcgggatcaccaacttt
gacaacatattctttgccatgttgactgtgttccagtgtatcaccatggagggctggacc
gatgtgctctactggatgaatgatgcaattggctttgaaataccctgggtgtactttgtc
tctctggtcatatttggctcgtttttcgttctcaaccttgtattgggagtgttgagcgga
gagttctccaaggaacgagagaaggccgtggctcgtggagagctgcaggacgcccagaat
aagaagcagatggaggaggatatgtgtggctacatggactggctcatcgaggccgaggat
gtggatgaggaaggaaacaaacgtatgccggtttttgacccttccgctcctcatataact
tgtctcctgtctctcacttcactcagtgaacagctatgccaactgaaccacgcctttcgg
aagaactgtcgtgtagcagtcaaatcccagaacttctattggctggtgcttcttctggtg
tttctcaacactgcagccagtgcctctgaacactacggccagcccaagtggctcactgag
atgcaggagcgggccaataagatcctgttgatgttgttcacgctggagatgctgttaaag
atgtacagtttcggtttccagattcacttcatggctctgtttaaccgcttcgactgcttc
gtggtgtgtggtggcatcctggagacggtcctggttgagttgcagatcatccctcccatc
ggcatctccgtgctgcgctgcgtccgcctgctcagggtgttcaaagtgacacggcactgg
gcagccctatcaaacctggtcaattccctgctcaactccatgaaggctatctgctccctg
ctgctcctgcttttcctcttcctcatcatcttctccctgctggggatgcagctgtttggg
ggcaagttcaactttgatgagactcagatgaagagaagcacgttcgacactttcccccag
gccctgctcacctgcttccagatccttacaggagaggactggaatgctgtgatgtatgat
gggatcatggcttatggcgggccagtcttcccacagatgattgtgtgtgtctacttcgtc
tccctctttgttgtaggcaactatatcctgctcaatgtcttcttggctatcgctgtggac
aacttggcaggtggcgatggtggaaaaaagcaagtagaagagaaaaaggatgatgaagag
gactgggatgaagatgaagacaaagaggaagatgcggcgaatgagatggatgactgggag
gagaatgaggagttgagagccatcgagggtctggagggaatcatgcctgtgaagcctgaa
tccgctccaaaagagaagattgaacccattccagatgggagctccttcttcattcttgga
aagagaaactgccttcgagtggcctgtcataatctcatccaccactcctacttcaccaac
ctcatccttgtcttcatcatcgccagtagtatttctctggccgctgaggatccaatcaga
gctcactcctttaggaacaacatgcttggctacgctgattatgcattcacctccatattc
actgtggaaatcatactgaaggtgacggtttttggtgcgttccttcatcctggttccttc
tgtaggaatgccttcaacctcctggatctgctggttgtcagtgtgtctctcgcgtccttc
ttcctccattccagcgctatctctgtggtcaagattttcagggtactcaaagtgctcagg
cctcttcgagctatcaacagagccaagggactcaagaatgtagtgcagtgcgtgtttgtg
gcaatcaaaaccatcggaaacatcttgatcgtcacaacactcctccagttcatgtttgct
tgtattggagtgcagctcttcaagggaagattctacagttgcaccgatgaagctaaacac
actccatatgagtgcatggggacgtttgtggtgtataaggatggggatatgaatcaccct
atggtgagagagaggaaatggcaaaacagtgaattcaactttgacaatgtgctgcagggc
atgctggccctgttcactgtgtctacatttgaaggctggccacagctgctgtacaaggcc
atcgacgccaatgctgcgaaccacggccctatttacaactaccgcgtggaaatctccata
ttcttcatcatctacatcatcatcatcgccttcttcatgatgaacatcttcgtgggcttc
gtcatcatcacgttccgtgaacagggagaatctgagttcaaaaactgcgaactgaacaaa
aatcaaagacagtgtgtacagtacgctctgaaagccaagcccatcaagatctacattccc
agaaacccgtcccagctgaagttctggaagatcatcgcctccagccagtttgagtacatc
atgtttgtcttaattcttctcaacaccctcaccttggctgtgcagcattatgagcagtct
aaaacattcaactctgtgatggacatgctcaacttgatcttcacagcactatttaccata
gagatggtcatcaagctactggctctcagaacacatcaatatttcattgatgcctggaac
tcctttgacgctctgatcgttgtgggcagtgtgctagacatcgtggtctcagagctgagt
gcaatcgaggccgcagcccaagctgcagctgtagccgtacccggagctccacccggggcc
aagaaggaaagcggaaaagtgtccatcacattctttcgtttgttccgagtcttgcgattg
gtcaagctgctcagcaaaggggagggcattcgaaccctcctctggacttttgtcaagtcc
ctccaggccttgccatatgtcggtctacttattgcgatgattttcttcatctacgctgtg
atcggcatgcagacatttggaaagattgctatagatgacaactcacatatcaacaggaac
aacaacttccagaccttcttcatgtctgtcctgctgctcttcaggtgtgccaccggagag
cagtggcaggagatcatgttggcagcgttgccagggagaccctgtgaccctgagtcagac
tttgagcccggggatgacaacatgtgcggcagcaacctggcttacatctacttcatcagc
ttcttcatgctctgcgctttcctgatcattaacttgttcattgctgtcatcatggacaac
tttgagtacctgaccagagattggactgtactgggaactcatcacctggacgagttcaaa
cgagtctggtcggattatgacccagaggcgacgggtcgaatcaaacatatcgatgtggtc
actatgctgcgcaggatccagccaccccttggttttggcaaactgtgcccccatcgtgtg
gcctgtaagaggctggttgctatgaacgtgccgctgcacagcgacgggacagtcaccttc
aatgccaccctgtttgcactggtcagaacctcactcaagatcaagaccgaggggcctgtt
gaccaggacaacgaggagctcagggccatcattaagaagatatggaagcgcactaagccc
aagctccttgaagaggtcattccaccccctagaggggaagaggtgacttgtgggaagttc
tatgccagcttcctgatccaggactacttcaaaaagttccgcaagaggaaggagcgggag
aggaagaagaagggaaaggacaagaaagactcactccaggcagggctcaggtcactgcag
gcactggccccagagttgcatctggccttggcaatggagggagaggatgaggagggtgtg
gagggagagttggatgaagagttcttcaagaatgacaacgttttcgaagatcctggcacc
tctgccacaagtactccatccaccactcacatgccagctgacatagaggagggcaccacc
actatcttcatggagcccttcgtcgagcccacaatatccagcaatgtggtcacagaacag
ccattgtcagtcagcgagaaaccagaatcagctctctcatcctttgatgtagtgatggaa
cagcccacgagatctgaggccatccctccaccagaagacacaccatccccgccccaacca
gccccagccgcatcaccaccaaaagatccatcccctccccaaccagcaccagccgcaaac
ccaccaaatgccccatcccagccccaaccagccccagttgcatcctcaccaaatgttgct
tctccaccacaggtggttactcaatccccacctcaaatagtgttagccccaccagaacca
gaggcacctcaaatagttttagaggcagcccctgccccacctcaaccagagccattgatg
gagggaagaggaggtgaaacgtccactacacagcaggtgtactacccacagtacccagtg
ggcatgccaacaaacaacgggcatgtgtatcaagagcaacctgtagcatcccctatcccg
tcagagtacatgcagagtcctactcctaacttcaccaatgggagagctgcaggagtgccc
tacgccaatggaaacggcatgaatgggaacatctacaatggcggtacgaatggaggtagt
gtgaatggagatagcatcaccggaagtagcatgagtggctacactggcaacggttacaac
ggaaatggatacaatggaaacggctacaatggaaacggtaacggattggagcagtatgtc
cggagacgtgttcttcctcccactcctgcaggtcgcaagccgccctcctttaacatccag
tgtctgagggcacagcatagcgcggatgacatccccatccctggcacgtacgagagtaac
tcgcccccatgcagatccagactgacccttgactcccgccgcagcagtgcctcctccatg
tcctctgcctcctgggccaacaacggaggaggacatgcagggttgacgccaggagcaggg
gtgtcggcagcatcagcagcagcagcgaagagagggcgtctgctctacgcccctctgatg
ctggtggatgaagccaggggcaccaagcaggtgtggggagacaggacccaggccacctcc
agcctccctgctattgcaaccaggcccagtggctggtaccctggagccccaacactccct
gtgcccaccccccagaacaggagctacaccaatggcagggtgccctcccagatcagccag
agcctcatagagaagggcagtgcagacagcctggtggagtcgatcctgatatcggaaggc
ttgggcctctatgcaagagacccaaagtttgtgaacttcgccaagcgggagatcgcggac
gcatgtaacatgaccattgatgagatggagaacgcagccacagacctgctgacccgttcg
gcgggccagccaataggacgcttcgaggaggagctggctgacgagatgaactgtgtgatt
tcctactga
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