Salvelinus namaycush (lake trout): 120061850
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Entry
120061850 CDS
T07522
Name
(RefSeq) protocadherin gamma-C5-like
KO
K16497
protocadherin gamma subfamily C
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120061850
Cell adhesion molecules [BR:
snh04515
]
Cadherins
Protocadherins
120061850
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
120061850
NCBI-ProteinID:
XP_038867561
UniProt:
A0A8U1F0U4
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Position
Sna17:complement(12406289..12412588)
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AA seq
849 aa
AA seq
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MTKRMGYRDWRWLALWWHNCFLLWSTIDGQTRYTIPEELKQGSVIGNLAKDLGLGLSEIF
DRKLRVASEAGKQYFSVDAGKGELIVNEIIDRETVCGKRASCVLPLQVVIENPLQLHRIE
VEIRDINDNSPNFITNELTLKIAESVVVGRQFSLESAEDPDVGSNALKYYTISKDECFSL
KVKDLSNGRKAPELVLEKRLDREKQAVHQLLLTALDGGNPFRSGTSQITITVLDVNDNFP
VFEKALYKVSIDENSPKGTFMVKLKAIDIDDVQNGEVKYSFGERTPNAVLSIFDIDSDTG
EMFLKGKLDFENAATYEIDISAKDNGTPEMEGQCSVQVEVVDVNDNPPEIIFTSKPSPLR
EDAPSGTVVALISARDLDSGNNGKVTLQLQRGNPFNMKPSFSNNYALVTNGVLDRESFSE
YNIEITATDSGSPPLTTKKTIPVSIIDVNDNSPKFTQSFYDVYLKENGLPGSILSSVSAS
DLDFGDNAKISYSILDSKVQGVSVSSYVYMNSDNGSIYSMHSFDYETLKVFQILVQAKDH
GSPSLNSNATVHVFILDQNDNAPAVIYPSAALGSLSHQKMPRSAKAGHLVTKVTAVDADS
GHNAWISYKLAEATDASLFSVNTYTGEVRTKRTVSEQDDSSQRLLIEIKDDGEPVQSSTV
TVAILVEDGLQEPILNLRQKAPEPGKKSGRITLYLILSLASVSMLSLVTFVVLAVKCVRN
SRSSGSCCMRLDDLDGYNNPNRNLQIQLNTDGPIKYVEVLGGDMLSQSQSFRSCLSPMSE
FSDFTFVKPSSTTDFNLFSIGGAFKEMINVLDASLPDSAWTFESQQMLWYLTGFSTTSVD
GDTPSESTV
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagagaatgggataccgagactggagatggcttgctctttggtggcataattgc
tttctcttgtggagtacaatagacggacagactcgctacaccatcccggaggaactgaaa
cagggctctgtgataggaaatctagccaaagatctggggttgggactatctgagatattt
gaccgtaaactgcgtgtcgcttctgaggctggtaagcagtatttcagtgtggatgcgggg
aagggcgagctgatcgtcaatgaaataatagatagagagactgtatgcggaaaacgcgcc
agctgcgttttacctctgcaggttgtcattgagaacccgttacagttacatcgaattgag
gtggaaatacgagacataaatgacaattcaccaaattttataacaaatgaactcacgttg
aaaatagcagaatctgttgttgtaggcaggcaattttctttggagagcgcagaggaccca
gatgtgggaagtaacgcactcaagtattacactattagtaaagacgagtgctttagttta
aaggtaaaagaccttagtaatggaagaaaagccccagagttagtattagaaaaacgttta
gatcgagagaaacaagctgtccatcagctactattaactgcactagatggggggaatcct
ttcagatctgggacgtcacagataactattacagtgcttgatgtaaacgacaatttccca
gtgtttgaaaaggcattgtacaaggtttccatagacgaaaatagtccaaagggtactttt
atggtcaaacttaaagcgattgacatcgacgatgttcaaaatggggaagtgaagtattca
tttggtgagcgcacccccaatgctgtgctttctatatttgacattgattcagacacaggg
gagatgtttttgaaaggaaaattagattttgaaaatgctgctacatatgaaattgatatc
agtgcaaaagataacggcactccggaaatggaaggacaatgtagtgttcaggtggaggta
gttgacgtaaacgacaaccctcctgaaataatttttacctccaagccgagtccgttgcgc
gaagacgcacccagtggcacagtagtggctttgatcagtgcccgagacctagactccggg
aataatggtaaagtaacgttacagctccagagaggcaatccttttaatatgaaaccgtcc
ttttctaacaattacgcactggtcaccaatggtgttttagaccgagagagcttctcagag
tataacattgagataacagccactgattcgggctcccctcccctgactaccaagaaaact
atacctgtcagtatcattgatgtcaatgacaactcccctaaattcactcagtccttctat
gatgtctatttaaaagagaatggactaccaggctccatactctcctcagtatctgcatct
gacctggatttcggggataatgccaaaatctcctactccatcctagactccaaagtgcag
ggcgtgtctgtctcctcctatgtgtatatgaactctgataacggcagcatctacagcatg
cactcgtttgactatgagacactgaaggtgtttcagattctagtgcaggcaaaggaccac
ggctctccgtctctgaacagcaacgccactgtccatgtttttatcctggaccagaacgac
aatgcccccgctgttatttacccctccgctgccctgggctcgctctctcaccagaagatg
ccccgctccgctaaagcaggccacctggttactaaggtaacggccgtagacgcagactcg
ggtcataacgcctggatctcgtataaactggcggaggccacagacgcgtctctgttcagt
gtcaacacttacacaggggaggtgaggactaaacgcactgtgtccgagcaggacgactcc
tctcagaggctgcttatagagataaaggacgacggggaaccggtacagtcttccacggtc
acagtggccatactggtagaggacggcctccaagaacccatcttgaacctccggcagaaa
gcgccagagcccggcaagaaaagcgggagaatcaccctgtatttgatcctctctctggcc
tcggtgtccatgctgtctctggtgacttttgtcgtcttagcggtcaagtgcgttagaaac
agcaggagcagcggtagttgctgcatgagactggacgatttggatggctacaataacccc
aatagaaacctgcagatccagctcaacactgacgggcctattaagtacgtagaggtcctg
ggaggggacatgttgtctcagagtcagtccttcaggtcctgtctctctcccatgtcagag
ttcagtgatttcaccttcgttaagcccagcagcaccactgactttaaccttttctcaata
gggggtgcttttaaggagatgatcaacgtcctagacgcgtctttacccgacagcgcctgg
acctttgagagccagcagatgctctggtatctgacgggtttcagcaccaccagtgtggac
ggcgacaccccctcggaatcaacggtgtga
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