Salvelinus namaycush (lake trout): 120062328
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Entry
120062328 CDS
T07522
Name
(RefSeq) vascular endothelial growth factor receptor kdr-like
KO
K05096
FMS-like tyrosine kinase 1 [EC:
2.7.10.1
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04010
MAPK signaling pathway
snh04020
Calcium signaling pathway
snh04510
Focal adhesion
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
120062328
04020 Calcium signaling pathway
120062328
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120062328
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
snh01001
]
120062328
Enzymes [BR:
snh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
120062328
Protein kinases [BR:
snh01001
]
Receptor tyrosine kinases (RTK)
VEGFR family [OT]
120062328
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Ig_VEGFR-1-like_5th
Ig_3
Pkinase
I-set
Ig_2
ig
VEGFR-2_TMD
VEGFR1-3_N_Ig-like
V-set
VEGFR-1-like_Ig-like
Haspin_kinase
Motif
Other DBs
NCBI-GeneID:
120062328
NCBI-ProteinID:
XP_038868140
UniProt:
A0A8U1H3E8
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Position
Sna17:15513163..15597106
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AA seq
1306 aa
AA seq
DB search
MAPLNCAKLSVVFHLITTISGQVSLPAPLLLPSEDTHLLHTGNSLNLTCRGAAQLYWRLP
WRNVTSEGVHVEECEPRVNAHCSKLLVRNLIPNDTGLYSCRYAQSSAHISSTYVYVKDEK
HPFVEHHFRNPSTLFSYRHEATLVIPCRTTSPDQIVTLEAWPSLSKEVEQGKEWDPKMGF
KIPYGPYKSYNLLTCVTSVNGQRVQSKYIPLRTTILLRNVKINPRRIKLLVGDSLVLNCS
AETTFNGRINLTWEYPKRMVNRNPIINKSKEDPALVTSMYKAITLSNITMDNRGVYRCTA
DIGNAEMRNKKHASAKVTIYEHPYLNVSYKNERARRVVYTEGRNKLMFEPKVNALPPPDT
MTWYKDGIPINENSTCYEFSGYNLFVKDLKQKDAGVFTIALGNKERGLYRNLSYTLIVQV
RPKISEEEVASEDVQPYMFGKQHQLTCTAFGVPMPDITWLWQPCHPDPTNKECTLYTEPI
PVQMDDKGNYSHNWIENIYNKTELVKGKNKTVSTLVVGVAHFSGIYSCVAENELGTCTLR
TPFYVDDHPQHLAIEPQTAIEGDDVTLTCRGTRYLYTDLQWHNPQNYTVTPDNVTALQLS
PYAISLSLSLHNVSRSHTTGYQCWAGNLHSKRVIVQTVLTVDERKRPWLRQNLTNQDVNS
SSTLTMACYALGVPPPYITWYKDKLPVQEGPGITLREDGVLTIERVKKDDEGLYECLASN
DEGSVKASAVVTVVGDEGKPNIEVIVLVCTGAAATFLWLMLILFIRKLRKPDYMMGPSII
IDPDECPLDEQCERLQYDGSKWEFPRDRLRLGKTLGHGAFGKVVEASAFGIDKLSTCKTV
AVKMLKGGATTNERKALMSELKILIHIGHHLNVVNLLGACTKPGGPLMMIVEYCKYGNLS
NYLRSKRADFIVYKSQDGKVVTSGSGCDLSELIKRRLESVASTGSSASSGFVEDKSYCDS
EEEEEEPEDLYKRVLTMEDLICYIFQVAKGMEFLASRKCIHRDLAARNILLSENNVVKIC
DFGLARDIYKDPDYVRKGDARLPLKWMAPEAIFDKIYTTQSDVWSFGVLMWEIFSLGASP
YPGLHIDEDFCCRLKEGTRMRAPEYSSSEIYQTMLDCWQAEPGDRPTFTELVERLGDLLQ
ASVQQEGKHYIPIAALLSKEGDPSNTALSEETNTRPLSYRDSGSTWNIKIRPASVKTFDE
VTMENGSNDNHEGGQSDSGMGLSSDDMNTLKRLESLARPLSIMALAMKAVSRSKESVLTE
GEKDKYPHPVSSLDFTLDDSSLEPGLECHSPPPDYSYVVRYSTPPV
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
atggccccgctcaactgtgccaaactctcagtcgtctttcatttaatcacaactataagc
ggtcaggtcagccttccagcccctctgctgctgccctctgaggacacacaccttctgcac
acagggaattcactcaacctcacctgcagaggtgcggcccagctgtactggaggctgccc
tggcggaacgtgacctcggagggggttcatgtggaggagtgtgagccccgggtgaacgcc
cactgtagtaagctgctggtgagaaacctgatcccaaacgacacggggctctacagctgc
aggtacgcccagtcctccgcccacatcagctctacctacgtatatgtcaaagatgaaaaa
catccgtttgtggagcaccatttccgcaatccatccaccctgtttagctacagacatgaa
gccaccctagtgattccctgtaggacaacttctcctgaccagatcgtcactcttgaagcg
tggccatccttatcaaaggaggttgaacaagggaaggaatgggaccccaaaatgggtttc
aagatcccatacggtccctacaaatcctataatctcctaacctgtgtcaccagcgtcaac
ggccaacgggtccagtccaaatacatccctctgaggactactatcttgctgaggaacgtg
aagatcaacccaagacgtatcaagctgttagtgggagatagcctggtcctcaactgctcc
gcagagaccaccttcaatggaaggatcaacttgacttgggaatacccaaagaggatggtc
aatcggaaccctatcatcaacaagtccaaagaagatccagctttggtcaccagtatgtac
aaagcaatcaccttgtccaacatcaccatggacaacaggggcgtgtacaggtgcacggct
gatatagggaacgctgagatgcggaacaagaagcacgcctcagccaaagtcaccatctac
gaacatccatacctgaatgtgtcctataagaatgaacgggccaggagagtggtctacacc
gagggtagaaacaagctgatgtttgaacccaaggtcaatgcactgccaccacccgacact
atgacatggtataaggatggcatccccatcaacgagaactccacctgttacgagttttca
ggctacaacctcttcgtcaaggacttgaagcagaaggatgccggggtcttcaccatcgcc
ctgggcaacaaagagagaggcctctacaggaatctcagctacactctgatagtccaagtg
aggccaaagatctccgaagaggaggtggcctcggaggatgtgcagccctacatgttcggc
aagcagcaccagctaacctgcaccgcctttggagtgcccatgcccgacatcacgtggctc
tggcaaccatgccatcctgaccccaccaacaaagagtgtaccctttacactgagccaatc
ccagttcaaatggacgataaggggaactactcacacaactggattgagaacatatacaac
aaaactgaactggtaaaagggaagaacaagactgtgagtacgctagtggtgggagtggct
cacttctcggggatctactcctgtgtggccgagaatgaacttggcacctgcacactgaga
acccctttctatgtggacgatcaccctcagcacctggccatcgagccccagactgccatc
gagggtgatgacgtcactctgacttgtcgcggcactcggtacctgtacacagacctgcag
tggcacaaccctcagaactacactgtcacccccgacaacgtcacggccctgcagctcagc
ccctacgctatctctctctccctctccctgcacaacgtgtccaggagtcacacaacaggc
taccagtgctgggcgggtaacctccacagcaagagggtcatagtccagactgtgctgact
gtggatgagaggaagaggccgtggctgagacagaacctgaccaatcaggatgtaaacagc
agcagtactctgactatggcctgctacgccctgggtgtgccgccaccctacatcacctgg
tacaaagacaagctaccagtacaggagggtccaggtattactctgagggaggatggggtg
ctgacgatcgagagagtgaagaaagatgatgagggcttgtacgagtgtctggccagcaac
gatgaggggagtgtgaaagccagcgctgtcgtcactgtcgtgggtgatgaggggaagccc
aacattgaggtgatcgtcctggtgtgtacaggagctgctgccaccttcctctggctcatg
ctcatcctcttcatccgcaagctgaggaagccggactacatgatgggtccatccatcatc
attgacccagacgagtgtcctctggacgagcagtgtgaacgcctgcagtacgatggcagc
aagtgggagtttccccgagaccgcctcagactgggcaaaactctgggccatggagccttc
gggaaagtggtggaggcctctgcttttgggattgacaagctctcgacctgcaagactgtg
gccgtcaaaatgctgaaaggaggagctacgacaaatgagcgcaaggctctgatgtcggag
ctgaagatcctgatccacattggtcatcatctgaacgtggtcaacctgctgggagcctgc
accaagcctggaggtccattgatgatgatagtggagtactgcaaatatggaaacttgtca
aactacttgagaagcaagagggctgatttcatcgtttataagagccaggacggtaaggtg
gtgacgtcggggtcgggctgtgacctcagcgagctcatcaagcggcgcctggagagcgtg
gccagcaccggaagctcggccagctccggctttgtggaagataagagctactgcgactca
gaggaagaggaggaagagccagaggatctgtacaagagagtgctgacaatggaagatttg
atttgctacattttccaagttgcaaaaggcatggagttcctggcttcacgcaagtgtatt
catcgtgatctggctgcaagaaacatcctactgtctgagaataatgttgtgaagatatgc
gattttggactggccagagacatctacaaagacccagactacgttcgcaaaggagatgcc
agactgcccctcaagtggatggcgccagaggccatttttgataagatctacaccactcag
agcgatgtgtggtcctttggagttctgatgtgggagatcttctctctgggtgcctctccg
tatcccggcttacacatcgacgaggacttctgctgccgactgaaggaagggaccaggatg
agagctccggaatactcctcctctgaaatataccagaccatgttggactgctggcaggct
gagccaggagaccggccaaccttcactgaattggtggagagactaggagacctgctacag
gccagcgtacagcaggagggaaagcattacatccctatagcagccctgctgtctaaggag
ggagacccctccaatacggccctgtcagaggagaccaacaccaggccactctcttaccgc
gactcagggagcacctggaacattaagatccgtccagcaagtgtgaagacctttgatgag
gttaccatggagaacggttctaacgacaaccatgaggggggccagtcggacagtgggatg
ggcctgtcgtctgatgatatgaacaccctgaagcgcctggagtccttggcccgaccactc
agcatcatggccctggcgatgaaggcagtgagtaggagtaaggagtcggtgctgactgag
ggagagaaggacaagtaccctcatcctgtctcctctctggacttcaccctggacgactcg
tccctggagcccggtctggagtgccacagcccgccccctgactacagctatgtagtgcgc
tactccaccccacctgtgtag
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