Salvelinus namaycush (lake trout): 120062411
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Entry
120062411 CDS
T07522
Name
(RefSeq) E3 ubiquitin-protein ligase XIAP-like isoform X1
KO
K04725
E3 ubiquitin-protein ligase XIAP [EC:
2.3.2.27
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04120
Ubiquitin mediated proteolysis
snh04210
Apoptosis
snh04217
Necroptosis
snh04510
Focal adhesion
snh04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120062411
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
120062411
04217 Necroptosis
120062411
09144 Cellular community - eukaryotes
04510 Focal adhesion
120062411
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
120062411
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
snh01002
]
120062411
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
snh04121
]
120062411
03029 Mitochondrial biogenesis [BR:
snh03029
]
120062411
Enzymes [BR:
snh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120062411
Peptidases and inhibitors [BR:
snh01002
]
Peptidase inhibitors
Family I32: IAP family
120062411
Ubiquitin system [BR:
snh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120062411
Mitochondrial biogenesis [BR:
snh03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
120062411
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BIR
zf-C3HC4_3
Prok-RING_4
UBA_BIRC2-3
Motif
Other DBs
NCBI-GeneID:
120062411
NCBI-ProteinID:
XP_038868302
UniProt:
A0A8U1F1X9
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All DBs
Position
Sna17:20108241..20120257
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AA seq
467 aa
AA seq
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MSGPGRDGDLESDHAVDWSMMDMRLDSFRGSLLAQQVSAERLARAGFYFTGQADKVRCFS
CHKTVENWCGGDAPAERHAEVSPTCKFLSCTHRSRVNSLQGAMLTNEPHYNEDAEDMEFR
LRTGEVVDESTYPMVPHMVSEDSRFNTLGPWPSTSSVQPRELAQAGLFYMGASDRVQCFC
CGGMLGGWQPGDTAWGEHSKHFPYCFFILGHDVGNLPSQAGREGDVGETRPRPGPRVPMQ
SFEERLGSFAGIQHTIDHERLARAGFYNTGAPDRVVCFCCGGGLKGWQPDENPWEEHAKH
YPGCSFLLAEKGQEFVSSVQLQGPDWNNAASSHLNGCSSHGTEVLRSAMAQRAVEMGLEP
ALVERTILERIRRAGTGYSTLETLLQDCFNRGPDSDAETAENHDEDPFEKLRKLQREKQC
KVCMDRDICIVFIPCGHLVVCKECSEALGKCPICCAAITQKIKTYIS
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggccccgggagagacggtgatctggagtcagaccacgcagtagactggtccatg
atggacatgcggttggactcgttccggggttccctcctggcccagcaggtgtcagcggag
agattggcccgcgctgggttctacttcacgggacaggctgacaaggtgcgctgcttcagc
tgccacaagactgtagagaactggtgtggaggggacgcacccgcggagaggcacgcggag
gtctcccccacctgtaagttcctgagctgcacccatcgatccagggttaactctcttcaa
ggtgccatgctgaccaacgaaccccactacaacgaagacgctgaggacatggagttccgc
ctgagaacgggagaagtggtggatgagtccacctaccccatggtcccgcacatggtcagt
gaagactcccggttcaacaccttaggcccgtggccctccacatcctcggtccagcctaga
gagctggcccaggcagggctcttctatatgggggcgagcgaccgggtgcagtgcttctgc
tgtggagggatgctggggggctggcagcctggggacacggcatggggggagcactccaaa
cacttcccctactgcttcttcatactggggcatgatgtggggaacctcccctctcaggca
gggagagagggggatgtaggggagaccaggccacgcccgggtcctcgggtccccatgcag
agctttgaggagaggctaggcagctttgcaggaatccagcacactattgaccacgagagg
ctggccagagcaggcttctacaacacaggagctccagaccgtgtggtgtgtttctgctgt
ggtggaggtctgaagggctggcagccggacgagaatccctgggaggagcacgccaaacac
tatccggggtgtagttttctgctggcagagaaaggacaggagttcgtcagcagtgttcag
ttacaaggtcctgactggaacaatgctgcttcaagtcacctgaatggatgttcaagtcac
ggaacagaggtgctgaggtcagccatggcccagagggcggtagagatgggtctggagcct
gccctggtagagaggactatactggagaggatacgcagggctgggacaggctactccacc
ctggagactctgctgcaggactgctttaacagaggccctgacagcgacgcagagaccgca
gagaaccatgatgaggatccctttgagaagctacggaagctgcagagggagaaacagtgc
aaagtgtgtatggacagagacatctgcatcgtcttcatcccctgtgggcacctggtcgtc
tgcaaggagtgttccgaggccctcggcaagtgtcccatctgctgtgcagccatcacacaa
aagatcaagacatatatctcctaa
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