Salvelinus namaycush (lake trout): 120066620
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Entry
120066620 CDS
T07522
Name
(RefSeq) G/T mismatch-specific thymine DNA glycosylase-like isoform X1
KO
K20813
thymine-DNA glycosylase [EC:
3.2.2.29
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
120066620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snh03400
]
120066620
Enzymes [BR:
snh01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.29 thymine-DNA glycosylase
120066620
DNA repair and recombination proteins [BR:
snh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
120066620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-GeneID:
120066620
NCBI-ProteinID:
XP_038873972
UniProt:
A0A8U1FC88
LinkDB
All DBs
Position
Sna21:12479322..12491146
Genome browser
AA seq
436 aa
AA seq
DB search
MEEKQYTSLTVPTDYLQQWYQSTQQHPQAQHVMQYHNTGHMGHYMEGSREDRVMTELSVH
QELPVHQELDFHHDFLGHQEPIVQHHQPVDTSQAPMPGKRKRGRPPKQKPGEGQPQEEHD
QAEALKKAKRTLNRFNGMSVDEVMAKTLPDIIDHNLDILIIGINPGLLSAYKGRHYPNPG
NHFWKCLFLSGLTDEQLNHMHDQNLPEKYGIGFTNMVERTTPGSKDLSSKEFREGGHQLV
EKLKKYKPLIAAFNGKCIYEIFSKEIFGVKAKKLEFGLQPYTIPETKTVCYLMPSSSPRC
AQFPRAQDKVHFYIKLKELRDKIKGVAPVAREVQETEYHFDLGLAKEDAKRMAIKEEQVD
PEYENCGGARQDAKQSTSYCNISSTKETGMPSKDQATAMSHMPYDQWMTQSFADQIPDIS
CNSSNVPQPQLGAETF
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagcagtatacgtcactgacggttcctacggattatctccaacagtggtac
cagtccacccagcagcacccccaagctcaacatgtgatgcagtaccataacacaggtcat
atgggccattacatggagggatccagagaggaccgggtcatgacagagctgtcggtccac
caggagctcccagtccaccaagagctggacttccatcatgacttcctcggccatcaagag
ccaattgtccaacatcatcagcctgtggatacatcacaagctccaatgccagggaagaga
aagagaggtaggcctcccaaacagaagccgggggagggccaaccgcaggaggaacacgat
caggcagaagctctgaagaaagccaaaaggacccttaaccgcttcaatggcatgtcagtg
gatgaggtcatggccaaaaccctgccagacattattgaccacaacctcgacattttgata
attggtatcaatccaggactattgtcagcctacaagggacgacattacccaaacccagga
aatcatttttggaaatgcctgttcctctctggtctcactgatgagcaactcaaccacatg
cacgatcaaaacctaccagagaagtatggcattggctttaccaacatggtggagaggaca
acgccaggaagcaaagacctctcaagcaaagagtttcgtgaaggaggccatcaattggta
gagaagctgaagaaatacaagccactaattgcagctttcaatggaaaatgtatttacgaa
attttcagcaaagagatctttggcgtgaaggcaaagaaactcgagttcggcttacagccg
tacacaatcccagaaaccaaaacggtgtgctacttgatgccctcgtcaagcccccgctgt
gcccagttcccccgcgctcaggacaaggttcacttctacatcaagctgaaggagctacgg
gacaagatcaagggtgtggccccagtcgcccgtgaggtgcaagagacagagtaccacttc
gacttgggacttgccaaagaggatgctaagaggatggccatcaaggaagagcaggtggat
cctgagtacgagaactgcggtggggcgcgccaggatgcaaagcaaagcaccagctactgc
aacatttcctccaccaaagagacaggaatgcccagtaaggaccaagctacagcaatgagc
cacatgccatacgaccagtggatgacacagtcgtttgcggaccagataccggacattagc
tgtaacagtagcaatgtacctcaacctcagttgggagcagaaaccttttga
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