Streptococcus pneumoniae INV104 (serotype 1): INV104_09670
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Entry
INV104_09670 CDS
T02072
Symbol
lig
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sni
Streptococcus pneumoniae INV104 (serotype 1)
Pathway
sni03030
DNA replication
sni03410
Base excision repair
sni03420
Nucleotide excision repair
sni03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
INV104_09670 (lig)
03410 Base excision repair
INV104_09670 (lig)
03420 Nucleotide excision repair
INV104_09670 (lig)
03430 Mismatch repair
INV104_09670 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sni03032
]
INV104_09670 (lig)
03400 DNA repair and recombination proteins [BR:
sni03400
]
INV104_09670 (lig)
Enzymes [BR:
sni01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
INV104_09670 (lig)
DNA replication proteins [BR:
sni03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
INV104_09670 (lig)
DNA repair and recombination proteins [BR:
sni03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
INV104_09670 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
INV104_09670 (lig)
MMR (mismatch excision repair)
DNA ligase
INV104_09670 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
INV104_09670 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
CBW36650
LinkDB
All DBs
Position
1054696..1056654
Genome browser
AA seq
652 aa
AA seq
DB search
MNKRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVG
GKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEVAHPTYICELKIDGLSISLTYE
KGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEELDITVRGECYMPRASFDQVNQVRQ
ENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASPSTRDSQEKGLKYLEQLGFV
VNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVA
YKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIRKD
DTVIVYKAGDIIPAVLRVVESKRVSEEKLDIPTNCPSCNSDLLHFEDEVALRCINPRCPA
QIMEGLIHFASRDAMNITGLGPSIVEKLFAANLVKDVADIYRLQEEDFLLLEGVKEKSAA
KLYQAIQASKENSAEKLLFGLGIRHVGSKASQLLLQYFHSIENLSQADSEEVASIESLGG
VIAKSLQTYFATEGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSE
AKSKLESLGAKVTGSVSKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaagaatgaatgagttagtcgctttgctcaatcgctatgcgactgagtactat
accagcgataatccctcggtttcagacagtgagtatgaccgcctttaccgtgagttggtc
gagttagaaactgcttatccagagcaagtgctagcagacagtccgactcatcgtgttggt
ggcaaggttttagatggttttgaaaaatacagtcatcagtatcctctttatagtttgcag
gatgctttttcacgtgaggagctagatgcttttgatgcgcgtgttcgtaaggaagtggct
catccgacctatatttgtgagctgaaaatcgatggcttatctatctcgctgacttatgaa
aaggggattttggttgctggggtaacacgtggagatggttcaattggtgaaaatatcaca
gaaaacctcaagcgtgttaaggacatccctttgactttgccagaagaactagatatcaca
gttcgtggggaatgttacatgccacgcgcttcctttgaccaagttaaccaagtgcgccaa
gaaaatggagagcctgaatttgctaatcctcgtaatgcggcagcaggaactctgcgtcag
ttggatacagcagtagttgccaagcgtaatcttgcaacgtttctctatcaagaagccagc
ccttcaactcgtgatagccaagaaaagggtttgaagtacctagaacaactaggttttgtg
gtcaatcctaagcgaatcttggctgaaaacatagatgaaatctggaattttatccaagaa
gtaggacaggaacgggaaaatctgccttacgatattgatggagtggtaatcaaggtcaac
gacctagcaagtcaagaagaacttggttttaccgttaaggctccaaagtgggcagtagcc
tacaagttccctgctgaagaaaaagaagctcaactcttatcagttgactggacagttggc
cgtaccggtgttgtaactccaactgctaatctaacaccagtacaacttgccggtacgact
gttagccgtgcgaccctgcacaatgtagattatattgctgaaaaagatatccgaaaagac
gatacggtcattgtatataaggctggtgacatcatccctgccgttttacgtgtggtagag
tccaaacgggtttctgaagaaaaactagatatccctacaaactgtccaagttgtaactct
gacttgttgcactttgaagatgaagtggccctacgttgtatcaatccgcgttgccctgct
caaatcatggaaggcttgattcactttgcttctcgtgatgctatgaatattacaggcctt
ggtccatctattgttgagaagctttttgctgctaatttagtcaaggatgtggcggatatt
tatcgtttgcaagaagaggatttcctccttttagagggggttaaggaaaagtccgctgct
aaactgtatcaggctatccaagcatcaaaggaaaattctgccgagaagctcttatttggt
ttgggaattcgtcatgtcggaagcaaggctagtcagcttttacttcaatatttccattca
attgaaaatctgtctcaggcagattcagaggaagtggctagtattgaaagtctaggtggc
gtgattgccaaaagtcttcagacttattttgcgacagaaggctctgaaattctgctcaga
gaattgaaagaaactggggtcaatctggactataaaggacagacggtagtagcggatgcg
gccttgtcaggtttgaccgtggtattgacaggaaaattggaacgactcaagcgctcagaa
gctaaaagtaaactcgaaagtctgggtgccaaagtgacaggtagtgtttctaaaaagacc
gacctcgtcgtggtaggtgcagacgctggaagtaaactgcaaaaagcacaagaacttggt
atccaggtcagagatgaggcatggctagaaagtttgtaa
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