Sulfuriferula nivalis: SFSGTM_22660
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Entry
SFSGTM_22660 CDS
T06628
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sniv
Sulfuriferula nivalis
Pathway
sniv03030
DNA replication
sniv03410
Base excision repair
sniv03420
Nucleotide excision repair
sniv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sniv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SFSGTM_22660 (ligA)
03410 Base excision repair
SFSGTM_22660 (ligA)
03420 Nucleotide excision repair
SFSGTM_22660 (ligA)
03430 Mismatch repair
SFSGTM_22660 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sniv03032
]
SFSGTM_22660 (ligA)
03400 DNA repair and recombination proteins [BR:
sniv03400
]
SFSGTM_22660 (ligA)
Enzymes [BR:
sniv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SFSGTM_22660 (ligA)
DNA replication proteins [BR:
sniv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SFSGTM_22660 (ligA)
DNA repair and recombination proteins [BR:
sniv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SFSGTM_22660 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SFSGTM_22660 (ligA)
MMR (mismatch excision repair)
DNA ligase
SFSGTM_22660 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SFSGTM_22660 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
BBP01558
UniProt:
A0A809S3Y2
LinkDB
All DBs
Position
complement(2380005..2382035)
Genome browser
AA seq
676 aa
AA seq
DB search
MTTIAEIQDHIEQLRKQLEYHNYRYYVLDAPEVSDAEYDSLFRELQNLEQQYPQFITATS
PTQRVGGAALSEFSHTTHSTPMLSLNNAFSDDDVIAFDRRVCEAVHVTEMIYAVEPKFDG
LAINLVYEHGQFVMGATRGDGYVGEDVTLNLRTIRAIPMSLATLTPPDRIEIRGEVLMLK
ADFQTLNQAQRNQGLKEFANPRNAAAGSLRQLDSRITATRGLHFFAYGVGECTGYVMPAT
HSAMMRQLAEWHLPVAKLVDVVQGVDGLLGYYQRVGEMREQLPFDIDGVVYKVDDLALQS
QIGFVARAPRFAIAHKFPAQEATTVVLDIDVQVGRTGAITPVARLVPVQVGGVIVTNATL
HNEDEIRRKDIRIGDSVNVRRAGDVIPEVVSVVLSRRPADVREFVMPTTCPVCGSHIVRL
ADEAIARCTGGLYCPAQRKQALWHFSSRRAMDIDGLGDKLIDQMVDEDIVHHPADLYRLG
LLSLMNLERMGEKSAQNILAAIEKSKQTTLARFIYALGIRHVGEQTAKDLARYFGNLDAL
MVADEETLIRVPDVGKVVANSVLQFFSEPHNRTVIELLLAMGVHWHDTMSVKDVVDNPLS
GSVFVVTGTLPNLSRDEAKAKIEAIGAKVAGSVSKKTTYVVAGADPGSKFIKAQELGVTI
IDEAELINILGKYEHE
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgactaccatcgctgaaattcaagaccatatagaacaattacgaaaacagctcgaatat
cataactatcgttattatgtgcttgatgcgcctgaggtcagcgatgctgagtacgatagc
ttattccgcgaactacaaaacctagaacagcaatatcctcaatttattacagccacatca
cccacgcaacgtgtgggaggcgcagcgctgagcgaattttctcatactacccacagcaca
ccgatgttatcactgaacaacgcgtttagtgatgatgatgtcatcgcatttgaccggcgt
gtgtgcgaggcagtgcatgtgacggaaatgatttatgcagtcgaacctaagtttgatggt
ttggcaatcaatctggtctatgaacatggtcagttcgttatgggagctacacgtggcgat
ggctatgtaggtgaagatgtgacattgaatctgcgtacgatacgtgcaattcccatgtct
ctggcaacattgactcctcctgatcgtattgaaatacgtggcgaagtattgatgttaaaa
gccgactttcaaacgctaaatcaagctcaacgtaatcaaggtttaaaagagtttgccaat
ccgcgcaatgcggcggcaggctcattacggcagttggattcacgtattaccgcaacacgt
gggctgcatttttttgcttatggcgtgggtgagtgtaccggctatgttatgccagcaacg
catagtgcgatgatgcggcaactggctgagtggcatttgccagtggctaagctggttgat
gtggttcagggtgtggatgggctgctgggttattatcagcgggtaggagaaatgcgtgag
caattgccatttgatattgatggcgtggtgtataaggtagacgatctggcattgcaatct
caaattggctttgttgctcgcgccccccgctttgcgatagcccataaatttcctgcacaa
gaggcgactacagtcgtattggatatcgatgtgcaagtggggcggacgggtgctatcacg
ccagttgcacgtttagtcccagtgcaggtgggtggggtgatagttactaatgcaacattg
cataacgaagatgagatacgtcgtaaagatatcaggataggtgacagtgttaatgtgcgg
cgtgcgggagatgtgattcctgaagtggtttctgtggttttgtcgcgtcgcccagccgat
gtccgcgaatttgttatgccgacaacatgccccgtgtgtggttctcatattgtgcgtctg
gctgatgaggcgattgcacgttgtactggcggtctgtattgtccagcccagcgtaaacag
gcgctatggcatttttccagtcgtcgagcgatggatattgatgggctgggcgataaactg
atagaccaaatggtcgatgaagatatcgtgcatcaccctgctgatttatatcggcttggt
ttgttaagcctgatgaatctggagcgcatgggggaaaaatctgcacagaatatattggcg
gcaatagaaaaaagcaaacagacaacgctggcacgttttatttatgcattgggtatccgt
catgtgggtgagcagacggctaaagatttagcccgctattttggcaatttggacgcatta
atggttgcggatgaggagacgctcatacgtgtgccagacgtgggtaaagtggtggctaat
tctgttttgcagttttttagtgaaccacataatcgtactgtgattgagttgctacttgcc
atgggtgtacattggcatgatactatgtctgtcaaggatgtcgttgataatccattaagt
ggtagtgtttttgtcgttacagggactttgcctaatttgagtcgtgacgaggcaaaagca
aaaattgaggctatcggagctaaggtagctggtagtgtatcgaaaaaaacgacatacgtt
gtcgcaggtgcagaccccggcagtaaattcattaaagcgcaagaattaggtgttaccatc
atcgatgaagctgaattgattaatatattgggaaaatatgagcatgaataa
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