Streptomyces nitrosporeus: CP967_03760
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Entry
CP967_03760 CDS
T06889
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
snk
Streptomyces nitrosporeus
Pathway
snk03030
DNA replication
snk03410
Base excision repair
snk03420
Nucleotide excision repair
snk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
snk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CP967_03760 (ligA)
03410 Base excision repair
CP967_03760 (ligA)
03420 Nucleotide excision repair
CP967_03760 (ligA)
03430 Mismatch repair
CP967_03760 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
snk03032
]
CP967_03760 (ligA)
03400 DNA repair and recombination proteins [BR:
snk03400
]
CP967_03760 (ligA)
Enzymes [BR:
snk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CP967_03760 (ligA)
DNA replication proteins [BR:
snk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CP967_03760 (ligA)
DNA repair and recombination proteins [BR:
snk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CP967_03760 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CP967_03760 (ligA)
MMR (mismatch excision repair)
DNA ligase
CP967_03760 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CP967_03760 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
PTCB-BRCT
Nlig-Ia
DNA_ligase_ZBD
HHH
UPF0758_N
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QEU71188
UniProt:
A0A5J6F4B8
LinkDB
All DBs
Position
complement(832553..834661)
Genome browser
AA seq
702 aa
AA seq
DB search
MTTNSAVVLADAASYAAAVEEATRAAAAYYATGESTLDDDAYDRLARGIAAYEEEHPQEV
LAGSPTGKVAGGTATGDVPHTVPMLSLDNVFSAEQFVTWTASVERRIGRPVTAWSVEPKL
DGLAVAVRYHEGRLQQLITRGDGTAGEDVSHAIGTVLGLPERLEDPVTLEVRGEILMTDE
QFDAANAARTAHGAAPFANPRNGAAGTLRAKDRPYRVEMTFFAYGALALPGSGGLAETLT
GLPHSEILRYVAGLGVHTAADTAVAPRTAATAEEVRAGVEDIAAQRATLPFGIDGIVIKA
DLAADQRDAGTGTRAPRWAIAYKLPAVEKVTRLLGVEWNVGRTGIIAPRAVLEPVEIDGS
TVSYATLHNPADITRRDLRLGDRVMVYKAGDIIPRIEAPVAHLRTGDEKPIEFPESCPRC
GSAIDTGEQRWRCTRGRDCRLVASVSYAAGRDQLDIEGLGGTRVVQLVDAGFVTDFADLF
TLERDQLLGLERMGETSTDNLLAAIETARTRPLSRVFCALGVRGTGRSMSRRIARHFATM
DRIVAADAEALQQVDGIGKEKAAGVVSELAELAPLVAKLVAAGVNMTEPGATPPPEPGAV
REEEAEAGEGAAAGGRPEGLPLDGMTVVVTGAMTGALEKLSRNEMNELIERAGGKSSSSV
SKRTSLLVAGEKAGSKRTKAEDLGVRIAEPAEFAEMVGSFLG
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgaactcagctgtggtgctcgccgatgccgcctcctacgccgccgcggtcgaa
gaggcgacacgggccgccgccgcgtactacgccacgggggagagcaccctcgacgacgac
gcgtacgaccgcctggcgcggggcatcgccgcctacgaggaggagcacccgcaggaggta
ctggccggctcgccgaccgggaaggtggcgggtgggaccgcgaccggcgacgtcccccac
accgtccccatgctctccctggacaacgtcttctccgccgagcagttcgtcacctggacc
gcgtccgtcgagcggcggatcggccggcccgtcacggcctggagcgtggagcccaagctg
gacggcctcgccgtcgccgtgcggtatcacgagggacgcctccagcagctgatcacccgg
ggcgacggcacggccggcgaggacgtctcgcacgccatcggcacggtgctcggcctgccc
gagcggctggaggaccccgtcaccctcgaggtacgcggcgaaatactcatgaccgacgag
cagttcgacgccgccaacgcggcgcgtaccgcccacggggccgcccccttcgccaacccg
cgcaacggcgcggcgggcaccctgcgcgccaaggaccggccctaccgcgtggagatgacc
ttcttcgcctacggcgccctggcgctgcccggttccggcggcctcgcggagaccctgacc
gggctcccgcacagcgagatcctccggtacgtcgcgggactcggtgtgcacaccgccgcg
gacacggcggtcgccccgcgtacggccgccacggccgaggaggtccgggcgggggtcgag
gacatcgccgcacagcgcgccacgctgccgttcggtatcgacggcatcgtgatcaaggcc
gacctggccgccgaccagcgcgacgcgggcaccggtaccagggccccgcgctgggccatc
gcgtacaagctcccggccgtcgagaaggtcacccgcctcctcggcgtcgagtggaacgtg
ggccggaccggcatcatcgcgccccgggccgtgctggagcccgtggagatcgacggatcc
accgtcagctacgccacactccacaacccggccgacatcacccgccgcgatctccgcctg
ggcgaccgggtgatggtctacaaggcgggcgacatcatcccccgtatcgaagccccggtc
gcccatctgaggacgggggacgagaagccgatcgagttccccgagtcgtgcccgcggtgc
ggttccgcgatcgacaccggcgaacagcgctggcgctgcacccggggccgcgactgccgc
ctggtcgcctccgtctcgtacgcggccggacgcgaccagctcgacatcgagggcctgggc
ggaacccgggtcgtgcagctcgtcgacgcgggtttcgtcaccgacttcgccgacctcttc
accctggagcgggaccagctgctcggcctggagcggatgggggagacctccaccgacaat
ctgctggcggccatcgagacggcgcggacccgcccgctgtcccgggtcttctgcgcgctg
ggcgtgcggggcaccgggcgttccatgtcccgccggatcgcacgtcacttcgcgacgatg
gaccggatcgtcgcagccgacgccgaggcgctccagcaggtcgacggcataggcaaggag
aaggcggcgggagtcgtctcggagctggcggagctggcaccgctggtcgcgaagctggtg
gccgccggggtcaacatgaccgagcccggcgccaccccgccgccggagcccggcgcggtg
cgggaggaggaggcggaggccggggagggggccgcggcgggcggccggccggaaggcctg
ccgctggacgggatgaccgtcgtggtgacgggggccatgaccggagcgctggagaagctc
tcccgcaacgagatgaacgagctgatcgagcgggccggcggcaagtcctcgtcgagcgtc
tccaagcgcacgagcctgctcgtcgcgggggagaaggccggttccaagcggaccaaggcg
gaggatctgggggtcaggatcgccgagccggcggagttcgcggagatggtcgggtcgttt
ctcggctga
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