Streptomyces nitrosporeus: CP967_09425
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Entry
CP967_09425 CDS
T06889
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
snk
Streptomyces nitrosporeus
Pathway
snk03030
DNA replication
snk03410
Base excision repair
snk03420
Nucleotide excision repair
snk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
snk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CP967_09425 (ligA)
03410 Base excision repair
CP967_09425 (ligA)
03420 Nucleotide excision repair
CP967_09425 (ligA)
03430 Mismatch repair
CP967_09425 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
snk03032
]
CP967_09425 (ligA)
03400 DNA repair and recombination proteins [BR:
snk03400
]
CP967_09425 (ligA)
Enzymes [BR:
snk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CP967_09425 (ligA)
DNA replication proteins [BR:
snk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CP967_09425 (ligA)
DNA repair and recombination proteins [BR:
snk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CP967_09425 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CP967_09425 (ligA)
MMR (mismatch excision repair)
DNA ligase
CP967_09425 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CP967_09425 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
HHH
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
QEU72166
UniProt:
A0A5J6F7Z2
LinkDB
All DBs
Position
complement(2175375..2177570)
Genome browser
AA seq
731 aa
AA seq
DB search
MAGEQQAQQLTKAPAQARERHALLSEQIEEHRFRYYVKDQPVVSDAEFDRLMRELEGVED
EYPELRTPDSPTQKVAGPYTTEFTSVEHHERMLSLDNAFDDAELAAWADRVAKDVGRPGY
HFLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPHHLQGEHLPELV
EIRGEVYFPMEAFEGLNARLVEAGDKPFANPRNAAAGSLRQKDPKITATRPLHMVVHGIG
ARRGLDIDRLSQTYDLLRDWGLPTARHNKVVDSLDGVREFIRYFGENRHSVEHEIDGVVV
KLDEIPLQGRLGATSRAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVKVA
GSEVEFATLHNQNVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEHEFVMPAECP
ECGTALRPMKEGDIDLRCPNARSCPAQLRERLAYLAGRKCLDIDHFGYVVAAALTKPLEP
AEPPLTDEGDLFSLTVDQLLPIRAYVLDPDSGLPKRDPKTGEEKTATVFANQQGEPKKNA
LAMLEGIEAAKQAPLARILTGLSIRHVGPVAAAELARQFRSFERIDQASEEELAAADGVG
PIIAASVKQWFAEPWHREILRKWREAGVRTEDEGAGEEEGPRPLEGLTVVVTGTLTTHTR
DGAKEALQSQGAKVTGSVSKKTSFVVVGENPGSKHDKAVQLKVPVLDEEGFAVLLTRGPD
AAREAAVPAEA
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atggccggcgaacagcaggcacagcagctgacgaaggcgccggctcaggcgcgggagcgg
cacgcgctcctgtccgaacagatcgaggaacaccgcttccgctactacgtgaaggaccag
ccggtcgtcagcgacgccgagttcgaccggctgatgcgggaactggagggcgtcgaggac
gagtaccccgagctgcgcacccccgactccccgacccagaaggtcgccgggccctacacc
acggagttcacctccgtcgagcaccacgagcgcatgctgtcgctggacaacgccttcgac
gacgcggagctcgccgcctgggccgaccgcgtcgccaaggacgtcggccgccccggctac
cacttcctgtgcgagctcaaggtggacggcctcgcggtcaacctcacctacgagcacggc
aggctgacccgcgcggcgacccgcggcgacggccgcaccggcgaggacatcacccccaac
gtgcggaccatcgccgagatcccgcaccacctccagggtgagcaccttcccgaactcgtc
gagatccggggcgaggtctacttcccgatggaggcgttcgaagggctcaacgcgcgcctg
gtggaagccggtgacaaacccttcgccaacccgcgcaacgcggcggccggctcgctgcgc
cagaaggacccgaagatcaccgccacccggcccctgcacatggtggtgcacggcatcggc
gcccgccggggcctggacatcgaccgcctctcccagacctacgacctgctgcgcgactgg
ggcctgcccaccgcccggcacaacaaggtggtcgactccctcgacggcgtacgcgagttc
atccggtacttcggtgagaaccgccactccgtcgaacacgagatcgacggagtcgtcgtc
aaactcgacgagatcccgctccagggccgcctcggcgcgacctcccgcgccccgcgctgg
gcgatcgcctggaagtacgcccccgaggaggtcaacaccaagctggtgaacatccgcgtc
ggtgtcggacgcaccggcagggtcaccccctacgcccaggtcgaaccggtcaaggtggcg
ggctccgaggtcgagttcgccaccctccacaaccagaacgtcgtgaaggccaagggcgtc
ctcatcggcgacacggtggtgctccgcaaggccggggacgtcatcccggagatcctcggc
ccggtcgtcgacctccgcgacggcagcgaacacgagttcgtcatgcccgccgagtgcccc
gagtgcgggaccgctctgcgccccatgaaggagggcgacatcgacctccgctgccccaac
gcccgctcctgccccgcccagttgcgggagcggctggcctacctcgcgggccgcaagtgc
ctggacatcgaccacttcggctatgtcgtcgccgccgccctcaccaagccgctggaaccc
gccgagccgcccctgacggacgagggggacctcttctccctgacggtggaccagctgctg
ccgatccgggcctacgtcctggacccggacagcgggctgcccaagcgcgacccgaagacc
ggcgaggagaagaccgcgaccgtcttcgccaaccagcagggcgagcccaagaagaacgcc
ctggccatgctggaaggcatcgaggccgccaaacaggccccgctcgcccgcatcctcacc
ggactctccatccgccatgtgggaccggtcgccgcggcggaactggcccggcagttccgg
tccttcgaacggatcgaccaggcgtccgaggaggaactggccgccgccgacggcgtcggc
ccgatcatcgccgcctcggtcaagcagtggttcgccgaaccctggcaccgcgagatcctg
cgcaaatggcgcgaggccggggtccgcacggaggacgagggggccggtgaggaggagggc
ccccggccgctcgaagggctcaccgtcgtcgtcaccggcaccctgaccacccacacccgg
gacggtgcgaaggaagccctgcagagccagggggcgaaggtcaccggctccgtctccaag
aagacgtcgttcgtggtcgtcggcgagaaccccggttccaaacacgacaaggcggtgcag
ctgaaggtgccggtcctcgacgaggagggcttcgcggtgctcctcacccgaggccccgac
gcggcccgcgaggccgcggtgcccgcggaggcctga
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integrated database retrieval system
