Ancylobacter novellus: Snov_3133
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Entry
Snov_3133 CDS
T01258
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sno
Ancylobacter novellus
Pathway
sno03030
DNA replication
sno03410
Base excision repair
sno03420
Nucleotide excision repair
sno03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Snov_3133
03410 Base excision repair
Snov_3133
03420 Nucleotide excision repair
Snov_3133
03430 Mismatch repair
Snov_3133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sno03032
]
Snov_3133
03400 DNA repair and recombination proteins [BR:
sno03400
]
Snov_3133
Enzymes [BR:
sno01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Snov_3133
DNA replication proteins [BR:
sno03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Snov_3133
DNA repair and recombination proteins [BR:
sno03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Snov_3133
NER (nucleotide excision repair)
GGR (global genome repair) factors
Snov_3133
MMR (mismatch excision repair)
DNA ligase
Snov_3133
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Snov_3133
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HALZ
Motif
Other DBs
NCBI-ProteinID:
ADH90408
UniProt:
D7A7V0
LinkDB
All DBs
Position
complement(3271960..3274137)
Genome browser
AA seq
725 aa
AA seq
DB search
MSARTPDIDVEKLTADEAAKEHARLGDEIAGHDRRYYQDDAPSVSDADYDALRRRYEAIE
AQFPELKGIDSLSEKVGAAPSSKFAKVRHRVPMLSLGNAFADEEVEEFVARVRRFLGLSA
DAEVAFTAEPKIDGLSCSLRYENGQFVQAATRGDGFEGEDVTNNVRTIGEIPERLKGNDV
PGIFEVRGEVYMGHADFAAINERQSASGKPLFANPRNAAAGSLRQLDPKITASRPLRFFA
YAWGEVADGALPSDTQFGVIEAFSRWGLPTNPLTVLCRSAQELLAHYHAIEEQRASLGYD
IDGVVYKVDSLALQQRLGFVSRSPRWALAHKFPAQRAITQLERIEIQVGRTGALTPVAKL
TPITVGGVVVSNASLHNEDYIKGIGGDGLPIRGTFNDEPVDIREGDWVVIQRAGDVIPQV
VSVELERRPKDAKPYQFPTICPACGSHAVREDGEAVRRCTGGLICPAQAVERIRHFVSRD
AFDIEGLGEKQVQAFFDWGLVKQPADIFTLEARDSAPDSLTRLKNRDGWGETSAKNLFAA
IAARRKVPVNRFLYALGIRHIGETNAKRLMRHYPTIEALREAALAAEMPGEAYPKGNEAW
AEMNAIEGIGAVVAEAVVDFFHEPNNEAALDALLKEVTPEPMEAVAGGGAVAGKTVVFTG
ALEKMTRDEAKAMAERLGAKVAGSVSKKTDYVVAGADAGSKLAKARELGVSVLTEDEWLE
LAGAG
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgcgcaccccggacatcgacgtcgagaagctgaccgccgacgaggcggccaag
gaacatgcccgcctcggcgacgagatcgccgggcacgaccggcgctactaccaggacgac
gcgccgagcgtctccgacgcggactacgacgcgttgcgccggcgctacgaggcgatcgag
gcacagttccccgagctcaagggcatcgacagcctgtccgagaaggtcggcgcggcgcct
tcgtcgaaattcgccaaggtgcgccaccgcgtgccgatgctctcgctcggcaacgccttc
gccgacgaggaggtggaggaattcgtcgcccgcgtgcggcgcttcctcgggctttccgcc
gacgccgaggtcgccttcaccgccgagccgaagatcgatggcctgtcctgctcgctgcgc
tacgagaacgggcagttcgtgcaggcggcgacgcgcggcgacggcttcgagggcgaggac
gtcaccaacaatgtgcgcaccatcggcgaaatccccgagcggctgaagggcaacgacgtg
cccggcatcttcgaggtacgcggcgaggtctatatgggtcatgccgacttcgccgcgatc
aacgagcggcaatcggcgtcaggcaagccgctcttcgccaatccgcgcaacgcggcggcg
ggcagcctgcgccagctcgatccgaagatcaccgcaagccggccgctgcgcttcttcgcc
tatgcctggggcgaggtggcggatggcgcgctgccttccgatacgcagttcggcgtcatc
gaggcgttctcacgctggggcctgccgaccaatccgctcaccgtgctctgccgctctgcg
caggagttgctggcgcattaccacgccatcgaggagcagcgcgcctcgctcggctacgac
attgacggcgtggtctacaaggtcgacagcctcgccttgcagcagcggctcggcttcgtc
tcgcgctcgccgcgttgggcgctcgcacacaaattcccggcgcagcgcgcgatcacgcag
ctcgagcgcatcgagatccaggtcgggcgtaccggcgcgcttactcctgtcgccaagctg
acgccgatcacggtcggcggcgtcgtggtgtccaacgcctcgctgcacaatgaggactac
atcaagggcattggcggcgatggactgccgatccgtggcaccttcaacgacgagccggtc
gatatacgcgagggcgactgggtggtcatccagcgcgccggcgacgtcatcccgcaagtg
gtgtcggtggagctggagcgccggccgaaggatgcgaagccctaccagtttccgacgatc
tgcccggcctgcggctcgcatgcggtgcgcgaggatggcgaggcggtacgccgctgcacc
ggtgggctcatctgtccggcgcaggccgtggagcgcatccgccacttcgtctcgcgcgac
gccttcgacatagaggggctgggcgagaagcaggtgcaagccttcttcgactgggggctg
gtgaagcagccggcggacatcttcacgctggaggcgcgcgattccgcgcccgactcgctg
acccgcctcaagaatcgcgacggctggggcgagacatcggccaagaacctgttcgccgcc
atcgcggcgcggcgcaaggtgccggtgaaccgcttcctctatgccctcggtatccgccat
atcggcgagaccaacgccaagcggctgatgcgccattacccgaccatcgaggcgctgcgc
gaggcggcgctcgccgccgagatgccgggcgaggcataccctaagggcaacgaggcctgg
gcggagatgaacgccatcgagggcatcggcgccgtggtcgccgaggcggtggtcgacttc
ttccacgagccgaacaacgaggcggcgctcgacgcgctgttgaaggaagtcacgcccgag
ccgatggaagcggtggcgggtggtggcgcggttgccggcaagacggtggtgttcaccggc
gcgctggagaagatgacccgcgacgaggccaaggccatggccgagcggctcggggccaag
gtggcgggctcggtgtcgaagaagaccgactatgtcgtggccggcgccgatgccggctcc
aagctcgccaaggcccgcgagctcggcgtttcggtgctcaccgaggacgagtggctggag
ctggcgggcgccggctga
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