Sphingomonas nostoxanthinifaciens: K8P63_01265
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Entry
K8P63_01265 CDS
T08862
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
snos
Sphingomonas nostoxanthinifaciens
Pathway
snos03030
DNA replication
snos03410
Base excision repair
snos03420
Nucleotide excision repair
snos03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
snos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K8P63_01265 (ligA)
03410 Base excision repair
K8P63_01265 (ligA)
03420 Nucleotide excision repair
K8P63_01265 (ligA)
03430 Mismatch repair
K8P63_01265 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
snos03032
]
K8P63_01265 (ligA)
03400 DNA repair and recombination proteins [BR:
snos03400
]
K8P63_01265 (ligA)
Enzymes [BR:
snos01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K8P63_01265 (ligA)
DNA replication proteins [BR:
snos03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K8P63_01265 (ligA)
DNA repair and recombination proteins [BR:
snos03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K8P63_01265 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K8P63_01265 (ligA)
MMR (mismatch excision repair)
DNA ligase
K8P63_01265 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K8P63_01265 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
Nlig-Ia
PTCB-BRCT
5_3_exonuc
DZR_2
Motif
Other DBs
NCBI-ProteinID:
UAK26436
LinkDB
All DBs
Position
complement(259971..262112)
Genome browser
AA seq
713 aa
AA seq
DB search
MIDPAALSEAEAAAALEQLAAEIAHHNRRYHDADAPEISDAEYDALVRRNAALEAAFPAL
VRSDSPSAQVGAEPTSALGKIRHAMRMMSLDNGFSDEDIAEFVARVRRYLALPEDAVVTL
TAEPKIDGLSCSLRYEKGALVQAATRGDGTTGEDVTPNVRTIGDIAQVLAGDDVPDVFEV
RGEIYMAKADFSALNARLLAEADDPAKARQFANPRNAAAGSLRQKDAAVTASRPLRFLAH
GWGETSALPADTQAGVMHAIARWGLPVSDMLTRVDTLDALVGHYRMIEAERAELPFDIDG
VVYKVDRLDWQQRLGFVAKAPRWAIAHKFPAERAQTTLEAIDIQVGRTGKLTPVGRLVPV
TVGGVVVSNVTLHNADEIARLGVRPGDRIIVQRAGDVIPQVVENLTPDEPRDAYVFPDHC
PVCGSEAVREEGEVDVRCTGGLVCAAQRFERLRHFVSRGALDIEGLGEKSIEEFITLGWI
REPADIFRLGAHRDDLLGREGWKEKSVDNLLAAIEAKRAPDAARLLFGLGIRHVGIVTAR
DLLKRYTTLDAIRALADALIALRDGFQRALGEEEGRFRNRMDKAIAELIGVENVGAAVGH
ALADFFHEPHNVQVWDDLLAAVSPPDFVVETQASRVSGKTVVFTGKLETMSRDEAKGQAE
RLGAKTAGSVSTKTDLVVAGPGAGTKLKQAETLGIEVIDEARWAEIVAAAGAG
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgatcgatcccgccgccctgagcgaggccgaggccgccgccgcgctggagcaactggcg
gccgagatcgcgcaccataatcgccgctatcacgacgcggacgcgccggagatttcggac
gccgagtatgacgcgctggtgcgccgcaacgccgcgctggaggcggccttcccagctttg
gtgcggagcgacagtccgagcgcgcaggtcggcgccgagccgacatcggcgctgggcaag
atccgccatgcgatgcggatgatgagcctcgacaacggcttttcggacgaggacattgcc
gaattcgtggcgcgcgtccgccgctatctggcgctgcccgaggatgcggtggtgacgctg
accgccgagccgaagatcgacggcctgtcctgctcgctgcgctacgagaaaggtgcgctc
gtccaggcggcgacgcgcggcgacggcaccaccggcgaagacgtgacgcccaacgtccgc
acgatcggcgacatcgcgcaggtgctggcgggcgacgacgtgcccgacgtgttcgaggtg
cgcggcgagatctacatggcgaaggccgatttcagcgcgctcaacgcccgcctgctggcc
gaggcagacgatcctgccaaggcgcgccagttcgccaatccgcgcaacgccgccgccggt
tcactgcgccagaaggatgcggccgtcaccgccagccgaccgctgcgcttcctcgcccac
ggctggggcgagacgagcgcgctgcccgccgacacgcaggccggcgtgatgcacgcgatc
gcgcgctggggactgccggtgtccgacatgctgacccgcgtcgacacgctcgacgcgctg
gtgggccattatcgcatgatcgaggcggagcgggccgagctgccgttcgatatcgacggc
gtcgtctacaaggtcgaccggctcgactggcagcagcggctgggcttcgtcgccaaggca
ccgcgctgggcgatcgcgcacaaattcccggccgagcgcgcgcagaccacgctggaagcg
atcgacatccaggtcggccgcaccggcaagctcacccccgtcgggcggttggtgccggtg
acggtgggcggcgtggtcgtctcgaacgtgacgctgcacaatgccgacgagatagcgcgg
ctgggcgtgcggccgggcgaccggatcatcgtccagcgcgcgggcgacgtgatcccgcag
gtcgtcgagaatctgacgccggacgaaccgcgcgacgcctacgtcttccccgatcactgc
ccggtctgcggatcggaggcggtgcgcgaggaaggcgaggtcgacgtgcgttgcaccggc
gggctcgtctgcgcggcgcaacggttcgagcggctgcgccatttcgtcagccgcggcgcg
ctcgacatcgaggggctcggcgagaaatcgatcgaggagttcatcaccctcggctggatc
cgcgagccggcggacatctttcgcctcggcgcgcatcgcgacgacctgctcgggcgcgag
gggtggaaggagaagtcggtcgacaacctcctcgccgcgatcgaggcaaagcgggcgccc
gatgcggcgcggctgctgttcgggctcggcattcgccatgtcggcatcgtcacggcgcgc
gacctgctcaagcgctacaccacgctcgacgcgatccgcgcgctcgccgacgcgctcatc
gcgttgcgcgacggcttccagcgcgcgctgggcgaggaggagggccgcttccgcaaccgg
atggacaaggcgatcgccgaattgatcggggtcgagaatgtcggcgcggcggtgggccac
gcgctcgcggatttcttccacgagccgcacaatgtgcaggtgtgggacgatctgctcgcc
gccgtgtcgccgcccgacttcgtcgtcgagacgcaggcgagccgcgtgtcgggcaagacg
gtggtgtttaccggcaagctcgagacgatgagccgcgacgaggcgaaggggcaggccgaa
cggctgggggccaagaccgccggctcggtctccaccaagacggatctggtcgtcgccggg
ccgggcgcgggcacaaagctgaagcaggccgagacgctcggcatcgaggtgatcgacgag
gcgcgctgggcggagatcgtcgccgcggccggcgcgggctag
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