Streptomyces nigra: DC008_24630
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Entry
DC008_24630 CDS
T05839
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
snz
Streptomyces nigra
Pathway
snz03030
DNA replication
snz03410
Base excision repair
snz03420
Nucleotide excision repair
snz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
snz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DC008_24630
03410 Base excision repair
DC008_24630
03420 Nucleotide excision repair
DC008_24630
03430 Mismatch repair
DC008_24630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
snz03032
]
DC008_24630
03400 DNA repair and recombination proteins [BR:
snz03400
]
DC008_24630
Enzymes [BR:
snz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DC008_24630
DNA replication proteins [BR:
snz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DC008_24630
DNA repair and recombination proteins [BR:
snz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DC008_24630
NER (nucleotide excision repair)
GGR (global genome repair) factors
DC008_24630
MMR (mismatch excision repair)
DNA ligase
DC008_24630
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DC008_24630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
HHH
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
AWE52569
LinkDB
All DBs
Position
5283513..5285708
Genome browser
AA seq
731 aa
AA seq
DB search
MAGDKQAETTAVPAEAREEHAQLAEQIEEHRFRYYVKDAPVVSDAEFDRLLKRLEALEEK
YPELRTPDSPTQKVAGSYETEFTAVEHRERMLSLDNTFNDEELAAWVDRIARELGDQEYH
FLCELKVDGLAVNLTYEKGRLTRAATRGDGRTGEDITPNVRTIAEIPERLHGDEVPELVE
IRGEVYFPMAKFLELNERLVAAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGA
LQGFSGMTRLSQAYDLLKTWGLPTSPHNRVVDDLAGIREFIAYYGENRHSVEHEIDGVVV
KLDEIRLQGRLGSTARAPRWAIAYKYAPEEVNTKLLDIKVGVGRTGRVTPYAQVEPVTVA
GSEVEFATLHNQEVVKAKGVLIGDTVVIRKAGDVIPEILGPVVDLRDGSEREFVMPSECP
ECGTPLRPMKEGDIDLRCPNARTCPAQLRERVAYLAGRECLDIEHFGSVAAAALTRPLEP
ADPPLADEGDLFDLTVEKLLPIKAYVLDPDSGLPKRDPKTGKEKVATPFANKEGGPRKNT
LALLANIEAAKQRPLARFLNGLSIRHVGPVAAQALAREFRSIDRIEQATEEELAATAGVG
PIIAAALKEWFAEDWHREIIRKWKAAGVPLEEQSSGEDEGPRPLEGLTVVVTGTLENHTR
DGAKEALESRGAKVTGSVSKKTSFVVVGDSPGSKYDKAMQLKVPVLDEDGFAVLLEQGPE
AAAEVALSAEQ
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaagcaggcggagacgacggcggtgcccgccgaggcccgcgaagagcac
gcgcagctggcggagcagatcgaggagcaccgcttccggtactacgtgaaggacgccccc
gtcgtcagcgacgccgagttcgaccggctgctgaagaggctggaggccctcgaggagaag
tatccggagctgcgcaccccggactcgccgacccagaaggtcgcgggttcgtacgagacg
gagttcaccgcggtcgagcaccgcgagcggatgctgtcgctcgacaacaccttcaacgac
gaggagctcgccgcctgggtggaccgcatcgcccgtgaactgggcgaccaggagtaccac
ttcctgtgcgagctgaaggtcgacggactcgccgtcaacctgacgtacgagaagggccgt
ctcacccgcgccgccacccgcggcgacggccgcacgggcgaggacatcacgcccaacgtc
cgcaccatcgcggagatcccggagcgcctccacggcgacgaggtccccgagctggtcgag
atccgcggcgaggtctacttcccgatggcgaagttcctcgagctcaacgaacgcctggtc
gccgccggcgacaagcccttcgccaacccgcgcaacgccgccgccggttcgctgcgccag
aaggacccgcgcgtcaccgccacccgcccgctgcacatggtcgtccacggcatcggcgcc
ctccagggcttctccggcatgacccggctctcccaggcctacgacctgctgaagacctgg
ggtctgcccacctcgccgcacaaccgcgtcgtcgacgacctcgcgggcatccgggagttc
atcgcgtactacggcgagaaccgccactccgtcgagcacgagatcgacggcgtcgtcgtc
aagctcgacgagatccggctccagggccgcctcggctccaccgcgcgcgccccgcgctgg
gccatcgcgtacaagtacgcgccggaggaggtgaacaccaagctcctcgacatcaaggtc
ggcgtcggccgcaccggccgcgtcaccccgtacgcccaggtcgagccggtcaccgtcgcg
ggcagcgaggtcgagttcgccaccctgcacaaccaggaggtcgtcaaggccaagggcgtc
ctcatcggggacaccgtcgtcatccgcaaggccggtgacgtcatcccggagatcctcggc
ccggtcgtcgacctgcgggacggcagcgagcgggagttcgtgatgcccagcgagtgcccc
gaatgcgggaccccgctgcggcccatgaaggagggcgacatcgacctccgctgccccaac
gcccgtacctgcccggctcagttgcgggagcgggtcgcctatctcgccggccgcgagtgc
ctggacatcgagcacttcggctcggtggccgccgccgcgctcacccgtccgctggagccg
gccgacccgccgctggccgacgagggcgacctgttcgacctgacagtggagaagctgctg
cccatcaaggcgtacgtcctcgacccggacagcggtctgcccaagcgcgaccccaagacg
ggcaaggagaaggtcgccacccccttcgccaacaaggagggcgggccgaggaagaacacc
ctcgccctgctggccaacatcgaggcggccaagcagcgcccgctcgcgaggttcctcaac
ggtctgtccatccggcacgtcggcccggtcgcggcgcaggccctcgcccgtgagttccgc
tcgatcgaccgcatcgaacaggccacggaggaagagctcgcggcgaccgccggagtcggt
cccatcatcgccgccgcgctcaaggagtggttcgccgaggactggcaccgcgagatcatc
cgcaagtggaaggcggccggagtgccgctggaggagcagtcctccggcgaggacgagggc
ccccgcccgctggaagggctgacggtcgtcgtcaccggcacgctggagaaccacacgcgg
gacggggccaaggaggcgctggagagccgcggagcgaaggtgaccggttcggtgtcgaag
aagacgtccttcgtcgtcgtgggcgacagcccggggtccaagtacgacaaggcgatgcag
ctgaaggtgccggttctggacgaggacggcttcgccgtcctgctggaacaggggccggaa
gcggcggccgaagttgccctgtccgcggagcagtag
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