Sulfuriroseicoccus oceanibius: G3M56_009890
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Entry
G3M56_009890 CDS
T07818
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
soa
Sulfuriroseicoccus oceanibius
Pathway
soa03030
DNA replication
soa03410
Base excision repair
soa03420
Nucleotide excision repair
soa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
soa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G3M56_009890 (ligA)
03410 Base excision repair
G3M56_009890 (ligA)
03420 Nucleotide excision repair
G3M56_009890 (ligA)
03430 Mismatch repair
G3M56_009890 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
soa03032
]
G3M56_009890 (ligA)
03400 DNA repair and recombination proteins [BR:
soa03400
]
G3M56_009890 (ligA)
Enzymes [BR:
soa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G3M56_009890 (ligA)
DNA replication proteins [BR:
soa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G3M56_009890 (ligA)
DNA repair and recombination proteins [BR:
soa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G3M56_009890 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G3M56_009890 (ligA)
MMR (mismatch excision repair)
DNA ligase
G3M56_009890 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G3M56_009890 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
DNA_ligase_ZBD
HHH_2
PTCB-BRCT
BRCT_2
HHH_5
E1-E2_ATPase
Motif
Other DBs
NCBI-ProteinID:
QQL44204
UniProt:
A0A6B3L9G4
LinkDB
All DBs
Position
2448531..2450735
Genome browser
AA seq
734 aa
AA seq
DB search
MDDLFANLDSDHSDSPQERMQELADEIRRHDVLYYQKAQPEISDAEYDKLFRELEKLERK
HPKLADPNSPTQRVGGAPLDEFTSVEHLVPMLSIDDVFELSDDQLSTLPDGHPREAELIE
FYQRLRKNTGQQKIPVTIEPKLDGVAVSLVYRDGALDYAATRGDGKRGDDITANVRTIQS
VPLVLPDSAPALLEVRGEIFMPNSGFAKMNEERDEEGLPTFANPRNATAGTLKQLDSKEV
AKRPLAFLAHGLGAYDGPTLASEDEFHLLLDTLGIPRNHPIWHASTLDDTLKAVAELNEK
RHSFDYATDGAVVKVLDRNLRDTLGTTARAPRWAAAYKFLPEQAETTLNDITIQVGRTGV
LTPVAELTPVLVSGTTVSRATLHNQDEINRKDVRIGDTVIIEKAGEIIPAVVKVVTEKRS
ADSQPFVLFDFVNGQCPSCHAPISQEEGFVAWRCTNFACPAQAVTSITQFASRKALDIDN
LGTSVAEALVSQKLATTPLDLFSLDVYTLASLNLGTKYVPRLFGEKRAQKVIDALEKAKS
QPLSRWLYAMGIRNIGESAAAELSRLHQSLTDIPNSEVITALADLPNYEALSVSKRKKEN
HPLLKDYQINADLGVIAAKSVLDYFQSDAGQAILSKLSEFGINPQSDNFAPKPAEQDTSD
LPLTGLTFVITGTLSAPRPQFKKRIEQLGGKVSGSISSKTDYLLAGDNAGSKMTKAESLG
VKVLDEESFEKMVD
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atggacgaccttttcgccaacctcgactcggaccactcggactcgccacaagagcgcatg
caggaactcgccgatgagatccgccgccatgacgttctctactaccaaaaggcacaaccc
gaaatcagcgacgccgagtacgacaagctcttccgcgaactcgaaaagctagagcgcaaa
caccccaaactcgccgacccgaactcgccaacccaacgcgtcggcggcgctcctttggat
gagttcacctcggtagaacacctcgtaccgatgctctctatcgatgatgtgttcgagctc
agcgatgatcaattgtccaccctccctgacgggcacccgcgcgaggcagaactgattgag
ttctaccaacgcctgcgcaaaaacacaggccagcagaaaatcccggtcaccattgaaccg
aagctcgacggcgtcgcggtcagcctcgtgtaccgggatggcgcactcgattacgcagcc
acccgcggcgacggcaaacggggcgacgacatcaccgccaatgtccggaccatccaatcg
gtaccgctggtgttgccggattccgctcccgcactgcttgaagttcgcggcgaaattttc
atgcccaacagcgggttcgccaagatgaacgaggaacgcgacgaagaagggctacccacc
ttcgccaacccgcgcaacgccacagcaggcaccctcaaacaactcgactcaaaggaagtc
gccaagcgccctctcgccttcctcgcccacggcctcggcgcctacgacggccccaccctc
gcctcggaggatgaatttcaccttttgctcgataccctcggcatcccacgcaaccacccg
atctggcacgccagcaccctcgacgacaccctgaaggccgtcgccgagctcaacgagaag
cgccacagcttcgattacgccacagacggcgccgtggtgaaggtgctcgaccgcaacctg
cgcgacacactcggtaccaccgcccgcgctccgcgctgggccgctgcctataagttcctg
ccggaacaagcggaaaccacgctcaatgacatcaccatccaggtcggccgcaccggcgtc
ctgacccctgtcgcggaactgacgcctgtcctcgtctccggcaccacagtctcccgggcc
acactccacaaccaggatgaaatcaaccgcaaggacgtgcgcattggcgacaccgtgatc
atcgaaaaagccggagagatcattccggccgtggtgaaagtcgtgactgaaaagcgttcg
gcggacagtcagcccttcgtgctcttcgacttcgtcaatggacagtgcccgtcatgccac
gcgccgatcagccaagaggaaggctttgtcgcctggcgctgcaccaactttgcctgcccg
gcccaagccgtcaccagcatcacgcagtttgcttcgcgcaaggcactggacatcgacaac
ctgggcacaagcgtcgccgaggcgctggtttcccagaagctcgccacgacacctctggac
ctcttctcgttggatgtctacacactcgcctcgctcaacctcggcaccaagtacgtcccc
cgcttgttcggtgaaaaacgcgcccaaaaggtgatcgacgcattggagaaagcaaagagc
caaccactctcccgctggctctacgccatgggcatccgcaatatcggggaatccgcggcc
gcagaactgtcgcgcctacaccaatccctcactgacatcccgaactcggaagtcatcacc
gctctggccgacctcccgaactacgaagcgctctccgtctcgaagcgcaaaaaggagaac
catccgctgctcaaggactaccaaatcaacgcagacctcggcgtcatcgccgccaaaagc
gtcctcgattatttccagtccgacgccggccaggccatcctcagcaaactcagcgaattt
gggatcaatcctcagtcggacaacttcgctcccaagcccgcggagcaagacacgtccgac
ctcccactgaccggactcaccttcgtcatcaccggcaccctgagcgccccgcgcccacag
tttaagaagcgcatcgaacaacttggtggcaaagtctcgggctcaatctccagcaaaacc
gactacctcctcgccggtgacaacgcgggctcgaaaatgaccaaggccgaatccctcggc
gtcaaagtcctcgatgaagagagcttcgaaaaaatggtcgactaa
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