Solenopsis invicta (red fire ant): 105204593
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Entry
105204593 CDS
T03916
Name
(RefSeq) TAR DNA-binding protein 43
KO
K23600
TAR DNA-binding protein 43
Organism
soc
Solenopsis invicta (red fire ant)
Pathway
soc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
soc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105204593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soc03019
]
105204593
Messenger RNA biogenesis [BR:
soc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
105204593
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
TDP-43_N
RRM_1
RRM_7
Motif
Other DBs
NCBI-GeneID:
105204593
NCBI-ProteinID:
XP_011172030
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Position
3:31836117..31846087
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AA seq
497 aa
AA seq
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MSSYIQVAEDEGEEPIELPTEDDTTLLLTTLSAQFPGTCGLKYRNPESRTMRGVRLVDGR
LHPPENGWGKAIYFCVFPKENKRKSDDNLENSTAKTKRMETKLRCTDLIVLGLPWKTTEQ
NLREYFETFGEVLMAQVKKDAKSGQSKGFGFIRFGSYESQLRCLAQRHMIDGRWCDVKVP
NSKNIDGLMMARQYDTGKHGNECYRPIPVHTPSSRRVPASKPYIASVNSSSSEATAPPSN
APPPRYDSEYDYKTTHYPSYPPNYPYDDNKYKYEGGGGGGGGGQQQVAYNAYNEKPSYAA
YEESAAYDSRGYMPPPHANAAAVPANPAYPPSDAEYGSRYYGEGRAAAYPADNCPEQYDK
GRYSNYGYEQRCYYDQADGRYAVATTDGRYEMRYSDARHPDGRHLPVDPGREADCRYVDS
REMDRRYVVDGREPIDGRYAMDNREVDGRYIATSDGRDPVDGRYADPARYPTKENYYDRY
YKHRPSRDHHVADTSRY
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcctacatccaggtcgccgaggacgagggcgaagaaccgatcgaactgccgacc
gaggacgacaccacgctcctactcaccaccctgtccgcccagttccccggcacttgcggc
ctcaagtaccgcaacccggaatcccggacgatgcgcggcgttcggttggtcgacggtcga
cttcatccgcccgagaacggctggggcaaagcaatctacttctgcgtatttcccaaagag
aacaaacgtaaatctgatgacaatttggaaaattccacagctaagactaaaagaatggaa
acgaaattacgttgcactgacttgattgtactcggtttgccgtggaaaaccactgaacag
aacttgcgcgagtatttcgaaacctttggtgaagttcttatggcacaggtaaagaaagat
gcaaaatccggtcaaagcaaaggatttggttttattcgatttggaagttatgaatcgcag
ttgagatgcctcgctcaacgtcatatgatagatggcagatggtgcgatgtcaaggttcct
aacagtaagaatatagatggattaatgatggcacgtcagtatgatacgggtaagcacggt
aacgagtgctaccgacctataccggtgcatacgccgagtagtcgccgagtgccggcgtcg
aagccgtacatagccagcgtaaactcgtcatcgtccgaggccactgctccgccctcgaac
gcgccacccccgagatacgactcggagtacgattacaaaaccacgcactacccgtcgtat
cccccgaattatccttacgatgataacaagtacaagtacgagggcggcggcggcggtggc
ggcggtggtcagcagcaggtcgcctacaacgcctacaacgagaagccgagctatgctgcc
tacgaggagtccgccgcctacgattctcgcggttacatgccgccaccgcatgcgaacgcc
gccgcggtacccgctaatcctgcgtatccaccatcggacgccgaatacgggtcgcggtac
tacggcgagggacgtgccgccgcttatccagccgacaattgtccggaacagtacgacaag
ggcaggtacagcaattacgggtacgagcaacggtgctactatgaccaggccgatggccgt
tacgccgtcgcaacgactgatggcaggtacgagatgcgctattcggacgcgaggcacccg
gacggccgacatttaccggtcgatcccggccgggaggcggactgccgatacgtggatagc
cgcgagatggacaggaggtacgtcgtcgacggtagggaacccattgacggcaggtacgcg
atggacaaccgcgaggtcgacggccgttacatcgccacatctgacggccgtgacccagtc
gatggtagatacgcggatccagcgagatacccgacgaaggagaactactacgatcgctat
tacaagcaccggccgtcgagggatcaccacgtcgcggatacatcaagatactga
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