Spinacia oleracea (spinach): 110779144
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Entry
110779144 CDS
T05137
Name
(RefSeq) ABC transporter I family member 19-like
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110779144
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110779144
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110779144
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
nSTAND3
AAA_29
ORC-CDC6-like
SMC_N
AAA
AAA_28
AAA_15
NACHT
AAA_23
AAA_5
AAA_33
AAA_30
AAA_18
AAA_22
SRP54
AAA_25
PduV-EutP
Arf
ATP-synt_ab
Zeta_toxin
cobW
AAA_24
Rad17
AAA_16
Motif
Other DBs
NCBI-GeneID:
110779144
NCBI-ProteinID:
XP_021839364
UniProt:
A0A9R0JLT4
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Position
1:complement(53513387..53523010)
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AA seq
294 aa
AA seq
DB search
MVQENGNVSGNSSRSIKVQAMQFAYPGQPPIFVDFSLQIAPGSRCLLVGANGSGKTTLLK
ILAGKHMVGGRDVVQVLNSSAFHDTHLVCGGDLAYLGGSWSKTIGCAGDVPLQGDISAEQ
MLFGVEGTDPDRRDKLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEVTVD
LDVVARMDLLELLKEECDQRGATIVYATHIFDGLETWATHLAYIQEGELRKVEKLSELHE
LKNSTNLLSVVEAWLRSETKLEKKKPVATITNNQKSSGFDASPFRSSRHMAYYR
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atggtgcaagaaaatggaaatgtgtcgggcaattcaagccgtagcatcaaagtgcaagcg
atgcaattcgcgtacccaggccaacctccaattttcgtcgattttagcctccaaattgct
ccgggttctcgttgtcttcttgtgggtgctaatggatctggtaagaccaccttgttgaag
attctggctggaaagcatatggttggtggaagagatgttgtgcaggtgttgaattcttca
gctttccatgacacacatcttgtttgtggtggtgatttagcatatttaggaggatcttgg
agtaagactattggctgtgctggtgatgttcctctccaaggagatatttcagctgaacag
atgctatttggagttgaaggcactgatcctgatagaagagacaaattaattgaattgctt
gatattgatttacaatggcgaatgcataaggtgtctgatggtcagcgaaggcgagtccaa
atctgcatgggtcttcttcatcccttcaaggtcctcttgttggatgaggttactgtcgat
cttgatgtagttgccaggatggatttgcttgaattattaaaggaagagtgtgatcagaga
ggagcaacaattgtttatgcaacccacatctttgatggtttggagacctgggcaactcat
ctggcctacattcaggagggagagttgaggaaggtagagaagctgtcagagcttcatgag
ttgaagaattcgaccaatcttctttctgtggttgaggcatggctacgttctgagactaag
ctcgagaagaagaaacctgttgccactattaccaataaccaaaagtcgtctggttttgat
gcttcaccatttagatcgtccagacatatggcctactaccggtaa
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