Spinacia oleracea (spinach): 110788465
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Entry
110788465 CDS
T05137
Name
(RefSeq) 5'-3' exoribonuclease 4 isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
110788465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110788465
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
110788465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_5
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
110788465
NCBI-ProteinID:
XP_021848798
UniProt:
A0A9R0JW69
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All DBs
Position
4:33156686..33170958
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AA seq
929 aa
AA seq
DB search
MGVPAFYRWLADRYPLAISNVVEEEPREEENGVVYPVDVSKPNPNGMEFDNLYLDMNGII
HPCFHPDKRPAPTTYDEVFKTIFAYIDHLFLLVRPRKILYMAIDGVAPRAKMNQQRSRRF
RAAKDAAEAEAEEERLKKEFESEGRILASKERRETSDSNVITPGTEFMFVLSVALQYYVQ
KKLNNHAGWRRVKVILSDANVPGEGEHKIMSYIRLQRDLPGFDPNTRHCLYGLDADLIML
ALATHELHFSILREVVTLPSQQEKCFTCGQGGHLAAECRAKPDINGNLVDDTPIYKKKYQ
FLHIWVLREYLQYDLEIPNPPFTTDFERLVDDFVFLCFFVGNDFLPHMPTLEIREGAINL
LMHVYRSEFAAIGGYLTDAGEVFLDKVEQFVQLVAVHEEQIFQKRVRLQQYYENNEEKNR
LRRDPVEEPQTPVEDKIKLGEPGYKERYYAEKFGASSQEEIDKIRKDVVLKYVEGLCWVC
RYYYQGVCSWQWFYPYHYAPFASDLKDLADLEITFFLGEPFKPFDQLLGTLPSASSDALP
EMYRKLMTDPSSPLLEFYPPDFDIDMNGKRFAWQGIAKLPFIDENKLLDETKKLEETLTV
DEQRRNCVMFDMLYVHPAHPLASQVVPYYQFYYQMPPDQRYAWPIDSNASCGMNGYLWIS
ERNGWRQVVPSPIFGLPDITNNQALNVTYLNPLPRKHIPQPPKGAIMPAKMVKYSDVKPF
PALWHEDNGNRRQFGRDRPQVPGAIRGPQLGEAAHRLLKNTLNMKHTGSSPGLLDYYMPH
QNQNHPGNNTFNRPRPAGPVGYERGYYDDRNYYGPRPMANGYRAPYEPRGIRQNDRLPHR
GGGGGDDRDLGVAMSNLTLGGGIRNRPPAEMRPRMQQNNFGQLPSPPINWINRPETGNNM
HFRQQEMSPQNQHRQVYQVKTQVQPTQPE
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccagcattctacaggtggttagctgatcgctatccattggcgatttccaac
gttgttgaagaagaaccaagggaggaggaaaacggcgtcgtatacccagttgatgtatcc
aaacctaatcctaatggcatggagtttgataatttgtacttggatatgaatgggatcatt
cacccttgtttccatcctgataaaaggcctgcacctacaacatatgatgaggtgttcaaa
acaatttttgcgtacattgatcatctatttttattggttcgtccaaggaagattctctac
atggcaattgatggagttgcacctagagctaaaatgaatcagcaacgttcacggcgcttc
agagctgcaaaagatgccgcagaggctgaagcagaggaggaaagactgaaaaaagagttt
gagtctgagggaaggatcctggcttctaaagagagacgagaaaccagtgactcaaatgtt
atcactccaggtaccgaatttatgtttgtgctctcggtggcacttcagtattacgtgcag
aagaaattgaacaaccacgctggctggcggagggtaaaggttattttatctgacgctaat
gtgcctggcgaaggagaacataaaattatgtcgtacattcggttgcaaagagatcttcct
ggttttgatcccaatactcgacactgtttgtatgggttggatgctgatttgattatgttg
gctttggccacacatgagctgcatttttcaattctgagagaggttgtcactctgccttca
cagcaagagaaatgttttacttgtggtcaaggtggtcatctggcagctgaatgtcgtgct
aagcctgatataaatggaaacttggtagatgacacccctatatacaagaaaaaatatcag
ttcctccacatttgggtattgagagaatatctgcaatatgacctggagattcctaatcct
ccttttactacggattttgaacgtttggttgatgatttcgtgttcctgtgcttctttgtt
ggcaatgacttccttccgcatatgcctacacttgaaattcgagagggtgcaataaacctg
ctgatgcatgtatacagaagcgaatttgcagctataggtggttatcttactgatgctggt
gaagtctttctagataaagtggaacagtttgttcaattagttgcagttcacgaagagcaa
atcttccagaaacgggtccgcttacagcagtattatgagaataatgaggagaagaacagg
ttgagaagagatcccgttgaagagccacaaactccagttgaagataagatcaaacttggg
gagcctggatataaagagaggtattacgccgagaaatttggtgcatcaagtcaggaggaa
atcgataaaatcaggaaagatgtggttttgaagtatgtagaaggtttatgttgggtttgc
cgttactactaccaaggtgtttgctcatggcaatggttctatccataccattatgctcca
tttgcttctgatctaaaagatttagctgatctagaaatcacatttttcttgggagagcca
tttaagccttttgatcaactcttgggaactctaccatccgcaagttccgatgctttgccg
gagatgtacaggaaattgatgacagatccatcatcacctctgcttgagttttatcctcct
gattttgatattgatatgaatggtaaacgctttgcttggcagggtattgcaaagttgcca
ttcattgatgaaaataaattgctagatgaaaccaagaagctagaggaaactttgacggta
gatgagcagcgccggaattgtgtgatgtttgatatgttatatgttcatcctgcacatcct
ttagcttctcaagttgtaccatattaccagttctactatcagatgcctcctgaccaaaga
tatgcttggccaattgacagcaatgcaagctgcggaatgaatggttatttatggatatct
gagaggaatggatggagacaagtagtcccttcaccaatatttgggctacctgatattaca
aacaaccaagctttaaatgtgacgtacttgaatcctctgcctcgtaaacacattccgcag
cctccaaagggtgcaattatgccagcaaagatggtaaaatattctgatgtgaaacctttc
cccgcattatggcatgaagacaatggcaatcggcgtcaatttggacgtgataggcctcaa
gtaccaggagcaatacgtgggcctcagttgggtgaagctgctcatcgtctcctaaagaac
acattaaatatgaaacatactggttcatctcctggattattggattattatatgccccat
cagaatcagaatcatccaggcaacaatacgtttaataggccaaggccagctggacctgta
ggatatgaaagaggctactacgatgacagaaattactacgggccccgtcctatggctaat
ggctacagagcaccatatgagccgcgtggaattagacaaaatgatagattaccacaccgt
ggaggtggaggtggagatgaccgtgatttgggagttgctatgtcaaatttgactctagga
ggagggattcggaatagaccaccagctgaaatgagaccaaggatgcaacaaaacaatttt
ggtcaacttccatcaccgcctatcaattggattaatagaccagaaactgggaataacatg
catttcagacagcaggaaatgtcaccccagaatcagcacaggcaagtttaccaagttaag
acacaagtacaaccaactcaaccagaatga
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