Spinacia oleracea (spinach): 110790093
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Entry
110790093 CDS
T05137
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO-like
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110790093
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
soe03041
]
110790093
Spliceosome [BR:
soe03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
110790093
Complex C
U5 SnRNP specific factors
110790093
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
MMR_HSR1
EFG_III
EFL1
Roc
EF-G_D2
Septin
Ras
Motif
Other DBs
NCBI-GeneID:
110790093
NCBI-ProteinID:
XP_021850529
UniProt:
A0A9R0IJK1
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Position
2:complement(92195642..92201043)
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AA seq
992 aa
AA seq
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MDDSLYDEFGNYIGPEIDSDQDDSDNDIPSDDDADKRPSDDEAPSSAAAGPTNGWMTISH
DEEDIEMVDNQVVLAEDKKYYPTAEEVYGDDVETLVEDEDELHLEQAIIKPVKALKFELG
VKDSSTYVSTQFMLGLMSNPNLVRNVALVGQVHHGKTLFMDMLVEQTHHISTFDPKNERH
MRYTDTRVDEQERRISIKSVPMSLVLEDSNSKSFLINIMDAPGHVNFSDEMSAALRLADG
AVLVVDAAEGVMVNTERAIRHATQERIPIVVVINKVDRLITELKLPPKDAYHKLRHTLEI
INNHITAASSTAGDVQLIDPAAGNVCFASATAGWSFTLLSFAKLYVKLHGVAFDANKFAS
RLWGDMYYHSDSRTFKRKPPATGGERSFVQFILEPLYKIYSQVIGEHRKSVEATLAELGV
TLPNAAYRLNVRPLLRLACSTVFGTATGFTDMLVQHVPCGKEASSRKVDHIYTGPKDTVV
YKSMENCDSSGPLMVNITKLYPKADCSVFDAFGRVYSGTIQTGQAVRVLGEGYSPEDEED
MTVKEVTKLWVYQARYRIPISKAPPGSWVLIEGVDASIMKTATLCNVDFDEDAYIFRPLQ
FNTLSVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIM
KDLRELYSEVEVKVADPVVSFCETVVETSSMKCFAETPNKKNKITMIAEPLERGLAEDIE
NGVVSIDWPRKKLGEFFQTKYEWDLLAARSVWAFGPDKQGPNILLDDTLPSEVDKNLLNA
VKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGTGQIIPTARRVAYSAFL
MATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYLVKAFLPVIESF
GFETDLRYHTQGQAFCSSVFDHWAIVPGDPLDKGIVLRPLEPAPIQHLAREFMVKTRRRK
GMSEDVSIQKFFDDAMVVELAQQAADLHLQMM
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atggatgacagcttatacgacgagttcggcaactacataggccctgagatcgactccgat
caggacgattccgacaacgatatcccttctgacgatgacgccgataaacgcccctccgac
gacgaagctccttcttctgccgccgccggacccaccaacggatggatgacaatctcccac
gacgaagaagacatcgaaatggtcgacaaccaggtcgtcctcgctgaagacaagaagtac
taccctactgcggaagaagtttatggcgacgatgtcgaaaccctagttgaggatgaagat
gaactccaccttgaacaggcgattatcaagcctgtcaaagccctaaaattcgaacttggt
gtcaaagactcgtctacctacgtctcgactcagtttatgctcggtcttatgtcaaaccct
aatttggttcgcaatgttgcgcttgttggccaagttcatcacgggaagactcttttcatg
gatatgcttgttgaacagactcaccacatttctacttttgatcctaagaatgaaaggcat
atgaggtatacagatacgagagttgatgaacaagagaggaggatttcaatcaagtctgtg
ccaatgtcgcttgttcttgaggatagtaactccaaatcatttttgattaatatcatggat
gccccgggccatgtgaatttctcagatgagatgagtgctgctctacgtcttgctgacggc
gctgtcctggttgttgatgcagccgaaggtgtcatggttaataccgagagagctattcgg
catgcaactcaggagcgtattccaatagttgtcgttattaataaggttgacaggttgata
acagagctgaaattacctcctaaagatgcctaccataagctaagacatactttagaaatc
atcaacaaccacatcactgcggcctcttccactgctggagatgtccagcttatagatcca
gctgctggaaatgtttgctttgccagtgcaacagcaggatggtcattcactttgctatca
tttgcaaaactgtacgtaaaactgcatggggtagcatttgatgcaaataagtttgcctct
cgtttgtggggagacatgtactaccattcagacagcagaacttttaagagaaaacctcct
gcaactggaggcgaaagatcttttgttcaatttatattagaacccctgtataaaatatat
agtcaggtcattggggagcatagaaagagtgtggaggcgacattagcagaacttggggtt
acacttccgaacgcagcctacaggttgaatgttaggccactgctaagacttgcctgtagc
acagtttttggtacagcaacaggcttcactgatatgctagttcagcatgttccttgcggc
aaagaagcttcttcaagaaaggttgatcatatatataccggtccaaaagacactgtggtt
tacaagtccatggaaaattgtgattcatcagggccacttatggttaatattaccaaactc
tatccaaaagcagattgcagtgtttttgatgcctttggtagagtgtacagtggcacgatc
caaacggggcaggctgttcgtgtgttaggagaagggtactcacccgaggatgaggaagat
atgacagttaaagaagtaacaaagttgtgggtttaccaagctcgttataggatccctata
agcaaggctccaccaggttcatgggttctcatcgaaggtgtagatgcctcaatcatgaag
actgcaacactttgtaatgttgattttgatgaggatgcatacatatttcgccctcttcag
ttcaatacactttcagtggtgaaaactgctacggagcctcttaatccaagtgaactaccg
aaaatggtcgagggtcttagaaaaatcagcaagagctacccacttgccattaccaaagta
gaggaatctggggagcatacaattttgggcactggagagttatacctagattctatcatg
aaggatctgagggagctttattcagaagtagaagtgaaggtagcagatccagttgtctca
ttttgtgaaacagtggtagagacttcatcaatgaagtgttttgctgaaacaccaaacaaa
aagaacaaaataaccatgattgcagagccattggagagaggtcttgcagaggatattgaa
aatggagttgtgagcattgactggcctcggaagaaactgggagagtttttccaaacaaaa
tacgaatgggatttgctggctgcccgttcggtatgggcgtttggtccagataagcaggga
cctaacatactgttagatgacacgcttcctagtgaagttgacaagaacttgctgaatgct
gtgaaggattctattgtccaaggctttcagtggggtgcacgagaaggtcccctctgtgat
gaaccaatcagaaatgtgaaattcaagatagttgatgctaggattgctcctgagccacta
catcgaggtactggacaaataatccccacagcccgtcgcgtggcttattcagctttcctt
atggcaacccctcgtcttatggagccagtttattatgtggagatacaaacacctatagat
tgtgtttctgcgatctacacagttctatctcgtaggcgtggccatgtgactgctgatgta
ccacaaccggggaccccagcgtatcttgtgaaggcatttttgcctgtgatagagtcattc
gggttcgagacagacttgaggtaccatacccaggggcaggccttttgctcttcagtgttt
gatcattgggcaattgtgcctggagatccactggacaagggcatcgtcctccggcctctt
gagcctgcccctatccagcatctcgcgagagagtttatggtaaagacccgacggagaaag
ggtatgtccgaggatgtgagcatccagaaattcttcgatgatgccatggttgtggagctc
gcccagcaggctgcggacctacatttgcaaatgatgtga
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