Shewanella oncorhynchi: RA178_09920
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Entry
RA178_09920 CDS
T09381
Name
(GenBank) efflux RND transporter permease subunit
KO
K18138
multidrug efflux pump
Organism
sog
Shewanella oncorhynchi
Pathway
sog01501
beta-Lactam resistance
sog01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
RA178_09920
01503 Cationic antimicrobial peptide (CAMP) resistance
RA178_09920
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sog02000
]
RA178_09920
01504 Antimicrobial resistance genes [BR:
sog01504
]
RA178_09920
Transporters [BR:
sog02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
RA178_09920
Antimicrobial resistance genes [BR:
sog01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
RA178_09920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
MMPL
SecD_SecF_C
DUF6286
Motif
Other DBs
NCBI-ProteinID:
WMB74887
UniProt:
A0AA50Q7I3
LinkDB
All DBs
Position
complement(2172945..2176196)
Genome browser
AA seq
1083 aa
AA seq
DB search
MSIISTSVKRPVTVWMFMLAVILFGMVGFSRLAVKLLPDLSYPTLTIRTMYDGAAPVEVE
QLVSKPIEEAVGVVKGLRKISSISRSGMSDVVLEFEWGTTMDMASLDVREKLDTIALPLD
VKKPLLLRFNPNLDPIMRLALSVPNASEADLKQMRTYAEEELKRRLEALSGVAAVRLSGG
LEQEVHIQLNQEKLSQLNLNADDIKRRINEENINLSAGKVIQGDREYLVRTLNQFNSLDE
LGQVIVYRDEQALVRLFEVATITDAYKERSDITRIGSQESIELAIYKEGDANTVAVAKKL
RDELVKINQDPKQNKLEVIYDQSEFIESAVSEVTSSALMGSLLSMLVIYLFLRNIIPTLI
ISISIPFSVIATFNMMYFADISLNIMSLGGIALAIGLLVDNAIVVLENIDRCRSEGMSKL
EAAVTGTKEVAGAIFASTLTTLAVFVPLVFVDGIAGALFSDQALTVTFALLASLLVALTS
IPMLASREGFKTLPALIKTAHKDKPTTKMGKLKHYSATVFSFPILLIVSYLPSALLTLVL
ILGRFFSWLIGLVMRPLSSAFNFVYHSIEKVYYKLLASALRQQKATLLLTIAITGACISL
LPRLGMELIPPMNQGEFYVEILLPPGTAVSETDKILQQLALSIKDRAEVKHAYSQAGSGG
LMTSDTARGGENWGRLQVVLNDHSAYNAVTQVLRDTARRIPELEAKIEQPELFSFKTPLE
IELTGYDLNLLKRSADSLVKALSASERFADVNTSLRDGQPELSIRFDHARLAALGMDAPT
VANRIAQRVGGTVASQYTVRDRKIDILVRSELAERDQISDIDALIINPNSSQPIALSAVA
EVSLQLGPSAINRISQQRVALVSANLAYGDLSDAVAQAQQILSQQVLPASVQARFGGQNE
EMEHSFQSLKIALILAIFLVYLVMASQFESLLHPLLILFAVPMALGGSVLGLYITQTHLS
VVVFIGLIMLAGIVVNNAIVLVDRINQLRSEGAQKLDAIRDAAKSRLRPIMMTTLTTTLG
LLPMALGLGDGSEVRAPMAITVIFGLSLSTLLTLIVLPVLYALFDRKEYAVTGSHVNVEE
TRP
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgtcaattatcagcacttccgttaaacggccagtcacggtatggatgttcatgctggcg
gtgattttattcggtatggtgggattttcccgcctagcggtgaagttactgccagactta
agctatcccacgttaaccattcgcactatgtatgacggcgcggcgccagttgaagtcgaa
cagctcgtctctaaaccaattgaagaagccgttggcgtggtcaaaggcttacgtaaaatc
agttctatttcgcgctcaggcatgtcagatgtggtgctcgagtttgaatggggcacaaca
atggatatggcgagtttagatgtacgtgaaaaactcgacactatcgctctgccgctcgat
gttaaaaagcccttattactgcgttttaaccccaaccttgaccctattatgcgtctcgcg
ctgtctgtgcctaatgcatctgaagctgatctcaaacaaatgcgcacctatgcagaggaa
gaacttaagcgtcgtttagaggcgctatctggggtcgccgccgtgcgtttatctggcggc
ctagagcaagaagtgcatattcagctcaatcaagaaaaactgtcgcagctcaatctcaat
gccgatgatattaaacgtcgtattaatgaggaaaacatcaacctctctgcgggtaaagtg
atccaaggtgatcgcgaatacttagtacgaacgctaaaccaattcaactcattagatgaa
ctcggccaagtgatcgtctatcgcgacgagcaagctttagtccgtttattcgaagttgct
accatcacagatgcttacaaagagcgtagtgatatcacccgcatcggcagtcaagaatcg
attgaactggccatttataaagaaggtgatgcaaatactgtcgctgtcgccaaaaaactg
cgcgatgaactcgtcaaaatcaatcaagaccctaagcaaaataagctcgaagtgatttac
gatcagtctgagttcatcgaaagtgcggtcagcgaagtcacctcttctgcgctgatgggc
agcttattatctatgctagtgatttacctgttcttgcgtaatatcatcccgacactgatt
atttctatctcgattcccttctcagtcatcgccacctttaacatgatgtattttgccgat
attagcttaaatattatgtcattaggtggtattgcccttgccatcggtctcttggtcgat
aacgccattgtggtattagagaacatagaccgctgccggagcgaaggcatgagtaaatta
gaagctgcagtgacggggactaaagaagtggcaggcgcgatttttgcctcaacactcacc
actcttgcggtgtttgtgccgttagtatttgtggatgggattgccggcgccctcttctca
gatcaagcgctaacggtcacttttgcgctgttagcatcgctattagtcgcgttaacgtcc
attccaatgctggcatcacgtgaaggctttaaaaccttacccgcgctgataaaaacggca
cataaggataaacccaccactaaaatgggcaagcttaaacactatagcgcgactgtgttt
tcctttcctattctattaattgttagttacttacccagtgcactactgaccttagtgttg
attttaggccgcttcttctcatggcttattggtctagtgatgcgcccgttaagctcagca
tttaactttgtctaccacagtattgagaaggtttattacaagcttctggcctcggcgctg
cgccaacagaaagcgacactgttactcacgattgcaataacaggcgcttgtattagctta
ttaccgcgacttggtatggagcttattccgccaatgaatcagggcgagttttacgtggag
atcttactgccgccgggtacggcagtgagcgaaaccgacaagatattacagcaacttgca
ctgtccattaaagacagagccgaagttaaacatgcttatagccaagctggtagcggcggt
ttgatgacttcggatactgcccgcgggggtgaaaactggggccgcttgcaagtggtgctt
aacgaccacagtgcctataacgcagtcactcaagtattacgtgatactgcgcgccgtatt
cctgaacttgaagcgaaaattgagcaacctgagttattcagctttaaaacgccactggaa
attgagctcacaggttacgatttaaacttactcaaacgcagcgcagatagtctcgtcaaa
gcattgtccgcatcggagcgttttgccgacgtgaacaccagtctacgtgatggtcaacct
gagctaagtatccgtttcgatcatgcaaggttagcggctctaggaatggatgcaccaacg
gttgcaaaccgtattgcccaacgtgttggcggtactgttgccagtcaatacacagtgcgt
gaccgtaagattgatattctagtgcgcagtgaactcgcggagcgggatcaaatcagcgat
atcgatgccttaatcatcaacccgaatagcagtcaacctattgcattaagcgcagttgca
gaagtttcattacaattaggcccatctgcgattaaccgcatcagccaacaacgtgtagct
cttgtatcagctaacctcgcctatggtgatttaagcgatgcggttgcacaggcgcaacag
atactatcgcaacaagtgttacccgcatcggtccaggcccgttttggtggtcaaaatgag
gaaatggagcactcgttccaatcactcaaaattgcccttatcttagcgattttcttagtg
tatttagtgatggcgagtcagtttgagtcactactgcaccccttgcttatcctttttgcc
gtacctatggcattaggtggcagtgtacttgggctttatatcacccaaactcacttgagt
gtggtggtatttattggccttatcatgttggcggggatcgtcgtgaacaacgcgattgtg
cttgtggatcggatcaatcaactgcgtagcgaaggtgctcaaaaacttgatgccattcgc
gatgcagctaaatcgcgcctacgcccgattatgatgacaaccctcaccacgaccttaggc
ttattgccgatggcgctaggtctaggtgatggctcagaggtgcgcgcaccgatggcgatt
acggtgatctttggtctgagtttatcaacactactgaccttaatagtgctcccagtgctc
tatgccctgttcgaccgtaaagaatacgccgtaactggctcacatgtaaacgtagaggag
actcgcccatga
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