Shewanella oncorhynchi: RA178_12015
Help
Entry
RA178_12015 CDS
T09381
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
sog
Shewanella oncorhynchi
Pathway
sog03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RA178_12015 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sog03400
]
RA178_12015 (nth)
Enzymes [BR:
sog01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
RA178_12015 (nth)
DNA repair and recombination proteins [BR:
sog03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RA178_12015 (nth)
Prokaryotic type
RA178_12015 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
HHH_8
Aldose_epim
HHH_5
Motif
Other DBs
NCBI-ProteinID:
WMB71170
UniProt:
A0AA50Q4V5
LinkDB
All DBs
Position
2651145..2651786
Genome browser
AA seq
213 aa
AA seq
DB search
MNQEKRIQILTRLRDNNPKPETELNFSSPFELLVAVTLSAQATDVSVNKATDKLFPVANT
AHSIYALGVEGLKQYIKTIGLYNNKAINVIKACEILIEKYNGEVPENREALESLPGVGRK
TANVVLNTAFGWPTIAVDTHIFRLANRTKFAPGKNVVEVEEKMLKVVPAEFKVDVHHWFI
LHGRYTCLARKPRCGSCIIEDLCEFKEKIYPEE
NT seq
642 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaagaaaaacgtatccagatcctcactcgtcttcgcgataacaatcccaaacct
gaaaccgaactcaatttttcaagtcccttcgagctgctagtggcagtgacgttatcggcc
caagcaacagatgtgagtgtcaacaaggcaacagacaagctctttcctgtggcaaacaca
gcccacagcatttatgcccttggcgtagaaggtttaaaacaatacataaaaaccataggc
ttatataacaacaaagccatcaatgtgatcaaagcctgtgagatcttgattgagaaatac
aatggtgaagtaccagaaaaccgcgaagccctagagtctctgcccggcgttggccgcaag
acggctaacgtggtactaaacactgcgtttggttggccaaccatagccgtcgacacccat
atttttcgcctcgccaatcgcactaaattcgcgcccggcaagaacgtagtcgaagtggaa
gagaaaatgctaaaagtcgtgccagcggaatttaaagtcgatgtgcaccactggtttatt
ctgcatggccgctacacttgcctcgcgcgcaaaccccgttgtggcagctgtatcattgaa
gacttgtgtgagtttaaagaaaaaatataccctgaagaataa
DBGET
integrated database retrieval system
