Streptococcus cristatus: I872_02030
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Entry
I872_02030 CDS
T02649
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
soi
Streptococcus cristatus
Pathway
soi03030
DNA replication
soi03410
Base excision repair
soi03420
Nucleotide excision repair
soi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
soi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I872_02030 (ligA)
03410 Base excision repair
I872_02030 (ligA)
03420 Nucleotide excision repair
I872_02030 (ligA)
03430 Mismatch repair
I872_02030 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
soi03032
]
I872_02030 (ligA)
03400 DNA repair and recombination proteins [BR:
soi03400
]
I872_02030 (ligA)
Enzymes [BR:
soi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I872_02030 (ligA)
DNA replication proteins [BR:
soi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I872_02030 (ligA)
DNA repair and recombination proteins [BR:
soi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I872_02030 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I872_02030 (ligA)
MMR (mismatch excision repair)
DNA ligase
I872_02030 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I872_02030 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
Zn_ribbon_PF0610
Motif
Other DBs
NCBI-ProteinID:
AGK70517
UniProt:
A0ABM5NID4
LinkDB
All DBs
Position
414885..416843
Genome browser
AA seq
652 aa
AA seq
DB search
MKERMSELVKLLNRYAHEYYTADRPSVSDSEYDRLYRELVELEEKYPADILPDSPAHRVG
GKILEGFEKYPHQYPLFSLQDAFSREELMAFDQRIRKEFPQVSYICELKIDGLSISLTYE
KGILVAGATRGDGSVGENITENLKRVKDIPLTLKEPLDITVRGECYMPKASFDAVNQLRQ
ENGEPEFANPRNAAAGTLRQLDTAVVVKRNLATFLYQEASPTQAGSQEAVLNKLAALGFS
VNPIHFLADSIDGVWEFIEKIAQERDSLPYEIDGIVIKVNDLAVQEELGFTVKAPKWAIA
YKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIRQK
DTVIVYKAGDIIPAVLRVVESKRVSEEALEIPSHCPSCESELVHFEDEVALRCINPLCPA
QIKEGLIHFASRDAMNITGLGPAVVEKVFDKDLVKDVAGIYRLSVEDLLTLDGFKEKSAN
KLYTAIQASKENSAEKLLFGLGIRHVGSKASRILMEKFHDMIKLSQASQEEISSIDSLGT
VIAQSLHSYFEQEGSQLLLRELQEAGVNLDYLGEKVAADAALAGKTVVLTGKLQKLTRNQ
AKEKLLSLGANVAGSVSKKTDLVVAGSDAGSKLTKAQELGIEIRDEDWLDSL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaagaatgtcagaattagtaaaattgctcaaccgatatgctcatgaatactat
acggcagacaggccaagcgtatcggacagcgagtatgacagactctatcgcgagttagtg
gagttagaagaaaagtacccagctgatatcctgcctgatagcccggcccatcgggtgggt
gggaagattttagaaggatttgaaaaatatccgcaccagtatcctctctttagtttgcag
gatgctttttcacgtgaagaattaatggcttttgatcaacgaatccgcaaggaatttcct
caggtttcctatatttgtgaactcaagattgatgggctttctatttccctgacctatgaa
aagggaatcttggtagcaggagcgactcggggggatggctctgttggtgaaaacatcacg
gaaaatctcaagcgggttaaggatattcctctgaccttgaaagaaccgctagacattacg
gttcgcggagagtgttacatgcccaaggcttcctttgatgcggtcaatcaactgcgtcag
gagaacggtgagcctgaatttgccaatcctcgcaatgcggcagcaggaaccctgcgacag
ttagatacagcagttgtggtcaagcgcaatctagcaaccttcctctaccaagaagccagt
ccgactcaggctggcagccaagaagcagttttgaataagctagcggctttgggattctca
gtcaatccgattcattttctagcggattcgattgatggcgtttgggaatttatcgaaaag
attgctcaggagcgggacagtcttccttatgagattgacggtatcgttatcaaggtcaat
gatttggcggtgcaagaggagcttggctttactgtcaaggcacccaagtgggccattgct
tataagtttccagctgaggaaaaggaagcccagcttctgtctgttgactggacagttggt
cggacgggagttgtgactccaacggcgaacttgacgccagttcagctggcggggacgact
gttagccgagcaaccttgcacaatgtggattatattgcagagaaggatattcgtcagaaa
gacacagttatcgtctataaagcgggagatattattcctgctgtcttgcgcgtggtagaa
tccaagcgggtctcagaagaggctttggaaataccaagtcactgtccgagctgtgagagc
gagctggtgcatttcgaggacgaagtggctctgcgctgcatcaacccgctttgtccagct
cagatcaaggaaggattgatccactttgccagccgagatgccatgaatattactggcctt
ggtccagcagtggtcgaaaaggtctttgataaggacttggtcaaggatgtggctggaatt
taccgactttctgtagaagatttgctgaccttggacggctttaaggaaaaatcagcgaat
aaattgtatactgccattcaagcttccaaggaaaactcagcagagaaattgctctttggt
ttgggaatccgtcacgtgggaagcaaggctagtcggattttgatggagaaattccacgat
atgatcaagctgtctcaggccagtcaagaggaaatttcttctattgacagcttgggtacg
gttatcgcgcagagtctgcattcttactttgagcaggaaggcagtcagcttctcctacgg
gaattgcaagaagctggcgtcaacctagactatctgggggagaaagtggcagctgatgcc
gctctcgctggcaaaacagtcgtattgaccggaaaattacaaaaattaacacggaatcaa
gctaaagaaaaattgctgagcttgggtgcaaatgtcgctggaagtgtgtctaaaaagaca
gatttggtggtggcaggcagcgacgcaggcagcaaattgaccaaagcccaagaacttgga
atcgagattcgggacgaggattggctagatagcttgtga
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integrated database retrieval system
