Shinella oryzae: K6301_09205
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Entry
K6301_09205 CDS
T08112
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
soj
Shinella oryzae
Pathway
soj03030
DNA replication
soj03410
Base excision repair
soj03420
Nucleotide excision repair
soj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
soj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K6301_09205 (ligA)
03410 Base excision repair
K6301_09205 (ligA)
03420 Nucleotide excision repair
K6301_09205 (ligA)
03430 Mismatch repair
K6301_09205 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
soj03032
]
K6301_09205 (ligA)
03400 DNA repair and recombination proteins [BR:
soj03400
]
K6301_09205 (ligA)
Enzymes [BR:
soj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K6301_09205 (ligA)
DNA replication proteins [BR:
soj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K6301_09205 (ligA)
DNA repair and recombination proteins [BR:
soj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K6301_09205 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K6301_09205 (ligA)
MMR (mismatch excision repair)
DNA ligase
K6301_09205 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K6301_09205 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Lar_restr_allev
HHH
RNA_ligase
MutL
Nlig-Ia
DZR_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
UPA23375
LinkDB
All DBs
Position
complement(1861732..1863891)
Genome browser
AA seq
719 aa
AA seq
DB search
MANAKIPVETLTEEEAAAELANLAAEIARNDELYHGQDAPAISDADYDALKRRNEAIEAR
FPALVRDDSPSRRVGAAPLPTFAPITHSRPMLSLDNAFSDEDVRDFVNSVYRFLGRLPDE
TIAFTAEPKIDGLSMSIRYENGRLVSAATRGDGTTGENVTANVLTISEIPNRLPPGVPDV
VEVRGEVYMAKSDFLALNEKMAAEGRQTYVNPRNTAAGSLRQLDASVTASRKLRFFAYAW
GEMSSMPADTQFGMIGVLKSWGFPVNPMTQRLTRVEDIIAHYREIGLTRPDLDYDIDGVV
YKVDELALQERLGFRSRSPRWATAHKFPAEQAFTIVEKIDIQVGRTGALTPVARLTPVTV
GGVVVTNATLHNADYIEGIGNSGERIRPEGHDIRIGDTVIVQRAGDVIPQVLDVVMEKRP
LDAASYVFPKTCPVCGSHAVRERHEKTGRLDSVTRCTGGFVCRAQAVEHLKHFVSRNAFD
IEGLGAKQIDFFFEAEDEALRIRTAPDIFTLRQRQEASPLVKLENIDGFGKVSVRKLFDA
IDARRSIALNRFIYALGIRHVGETNAKLLARAYGTYDAFATAMKEAESLSGDAWNDLNNI
EGIGEVVARAIVEFYKEPRNLDVLDRLLKEVTPEAAEAVVVSSSPVAGKTVVFTGSLEKM
TRDEAKAMAERLGAKVAGSVSKKTDLVVAGPGAGSKLDKAREFDIEVIDEDGWFERIKS
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atggccaacgcgaaaatccctgtcgagacgctgaccgaagaagaggccgcggccgaactg
gccaatcttgcggcggagatcgcgcgcaacgacgagctctatcacgggcaggatgcgccg
gcgatctcggacgcggactatgacgcgctgaagcgccgcaacgaggcgatcgaggcgcgc
ttcccggccttggtgcgcgatgacagcccgtcgcgccgcgtcggtgcggcgccgcttccc
accttcgcgccgatcacccattcgcgcccgatgctgtcgctcgacaacgcgttctccgac
gaggacgtgcgggatttcgtcaatagcgtctatcgtttcctggggcgcctgcccgacgag
acgatcgccttcaccgccgaaccgaagatcgacggcctgtcgatgtccatccgctatgag
aacggccgcctcgtatcggcggccacgcgtggcgacggaacgacgggcgagaacgtgacg
gccaacgtgctgaccatcagcgagataccgaaccgcctgccgcccggcgtgcccgatgtc
gtggaggtgcgcggcgaggtctacatggccaagagtgactttctggcgctcaacgagaag
atggcggccgagggccggcagacctatgtcaacccgcgcaacacggcggcggggtcgctg
cgccagctcgatgcgagcgtgacggcaagccgcaagctgcgtttcttcgcctatgcctgg
ggcgagatgtcgtccatgccggcggatacccagttcggcatgatcggcgtgctgaaatcg
tggggcttcccggtcaacccgatgacgcagcgcctgacccgggtggaggatatcatcgcc
cactatcgcgagatcggcctgacccggccggatctcgattacgatatcgacggcgtcgtc
tacaaggtggacgaactggcgctgcaggagcggctgggctttcggtcccgttcgccgcgc
tgggcgacggcgcacaagttcccggccgagcaggccttcacgatcgtcgagaagatcgac
atccaggtgggccgtacgggcgctctcacacccgtcgcgcgcctgacgccggtcacggtc
ggcggcgtggtcgtcaccaatgcgaccctgcacaatgcggattatatcgagggtatcggc
aacagcggcgaacgcatccgccccgaggggcacgatatccgcatcggagacaccgtcatc
gttcagcgtgccggcgacgtgatcccgcaggtgctcgacgtggtgatggaaaagcgccca
ttggatgcggcgtcctatgtctttcccaagacgtgtccggtctgtggcagccatgccgtg
cgcgaacggcacgagaagaccgggcggctcgattccgtgacgcgttgcaccggtggcttc
gtctgtcgcgcgcaggccgtggaacacctcaagcatttcgtgtcgcgcaatgccttcgat
atcgaagggctgggcgccaagcagatcgacttcttcttcgaggcggaggatgaggccctg
cgcatccgcacggcgcccgatatcttcaccctccggcaacggcaggaggcctcgcctctc
gtcaagctggagaacatcgacggtttcggcaaggtcagcgtgcgcaagcttttcgatgcg
atcgatgcccgccggtcgatcgcgctcaaccgcttcatctatgcgctcggcatccgccat
gtgggcgaaaccaacgccaagcttctggcgcgcgcgtatggcacctacgatgccttcgcg
acggcgatgaaggaggccgaaagcctgtccggcgatgcttggaacgacctcaacaatatc
gagggcatcggcgaggtcgtcgcgcgcgccatcgtcgagttctacaaggagccgcgcaac
ctcgatgtgctcgaccggctgctgaaggaagtcacgcccgaggcggcggaagcggtggtc
gtctcctccagcccggtggcgggcaagaccgtcgtcttcaccggttcgctggaaaagatg
acgcgggacgaagccaaggccatggcggagcgtctgggcgcgaaggtcgccggttccgtt
tccaaaaagaccgatctcgtcgtggccgggccgggagcgggttccaagctcgacaaggcg
cgcgaattcgacatcgaggtaatcgacgaggacggctggttcgagcgcatcaagtcgtga
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