Streptomyces okerensis: ACE1N8_25255
Help
Entry
ACE1N8_25255 CDS
T11145
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
soke Streptomyces okerensis
Pathway
soke03030
DNA replication
soke03410
Base excision repair
soke03420
Nucleotide excision repair
soke03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
soke00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACE1N8_25255 (ligA)
03410 Base excision repair
ACE1N8_25255 (ligA)
03420 Nucleotide excision repair
ACE1N8_25255 (ligA)
03430 Mismatch repair
ACE1N8_25255 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
soke03032
]
ACE1N8_25255 (ligA)
03400 DNA repair and recombination proteins [BR:
soke03400
]
ACE1N8_25255 (ligA)
Enzymes [BR:
soke01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACE1N8_25255 (ligA)
DNA replication proteins [BR:
soke03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACE1N8_25255 (ligA)
DNA repair and recombination proteins [BR:
soke03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACE1N8_25255 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACE1N8_25255 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACE1N8_25255 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACE1N8_25255 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
HHH
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
XKV07285
LinkDB
All DBs
Position
5580973..5583168
Genome browser
AA seq
731 aa
AA seq
DB search
MAGDRQAETTSVPAEAREKHAGLAEQIEEHRFRYYVNDAPVISDAGFDELLRELEALEEE
HPELRTPDSPTQKVAGAYATEFTSVQHVSRMLSLDNTFNDEDLAAWAERIHRELGEQKFH
FLCELKVDGLAVNLTYERGRLVRAATRGDGRTGEDITPNVRTIAEIPDRLTGDKVPDLVE
IRGEVYFPMEKFQELNARLNAAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGV
LEGYRGMTRLSQGYDLLKTWGLPTSTHNRVVDDLAGVREFIAHYGENRHSVAHEIDGVVV
KLDEIPLQGRLGTTSRAPRWAIAYKYAPEEVNTKLVDIRVGVGRTGRVTPYAQVEPVTVA
GSEVEFATLHNQDVVRAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMPAECP
ECGTPLKPMKEGDVDLRCPNARSCPAQLRERLFYLAGRKALDIEHFGYVAAAALTRPLEP
ADPPLTNEGDLFDLTVEQLLPIKAYVLDQDSGLPKRDPKTGEEKVATVFANQEGEPRKNA
VAMLANIDAAKERPLARVLTGLSIRHVGPVAAEALAREFGSVDRIEQATEEELANTEGVG
PIIAASLKQWFAEDWHREIIRKWKAAGVRMEDEGAGEDQGPRPLQGLTVVVTGTLDGYTR
DGAKEALQSQGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLNEAGFTVLLERGPE
AAADLALSAEE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtggccggggacaggcaagcggagacgacgagcgtgcccgccgaggcgcgggagaagcac
gccgggctcgccgagcagatcgaggagcaccgcttccggtactacgtgaacgacgccccc
gtcatcagcgacgccggcttcgacgagctgctgcgtgaactggaggcgctggaggaggag
catccggagctgcgcaccccggactcgccgacccagaaggtcgccggggcgtacgcgacg
gagttcacctccgtccagcacgtctcgcgcatgctctccctcgacaacaccttcaacgac
gaggacctcgccgcctgggccgagcgcatccacagggaactgggcgagcagaagttccac
ttcctgtgcgagctgaaggtcgacggcctcgcggtcaacctcacctacgagcggggccgg
ctcgtccgcgcggcgacccgcggcgacggccgcaccggcgaggacatcacgcccaacgtc
cgcaccatcgccgagatcccggaccggctgacgggcgacaaggtgcccgacctcgtggag
atccgcggcgaggtctacttccccatggagaagttccaggagctcaacgcccggctgaac
gcggccggcgacaagcccttcgccaacccgcgcaacgccgcggccggttcactgcgacag
aaggacccgcgggtcaccgccacccgcccgctgcacatggtggtccacggcatcggtgtc
ctggagggctaccggggcatgacccgcctctcccagggctacgacctgctcaagacctgg
ggcctgcccacctccacccacaacagggtcgtcgacgacctcgccggtgtacgggagttc
atcgcccactacggcgagaaccgccactccgtggcgcacgagatcgacggtgtcgtcgtc
aagctcgacgagatcccgctccaggggcgtctcggcaccacctcccgcgccccgcgctgg
gcgatcgcgtacaagtacgcgcccgaggaggtcaacaccaagctggtcgacatccgcgtg
ggggtggggcgtacgggcagggtcaccccgtacgcgcaggtggagccggtcaccgtcgcc
ggttccgaggtcgagttcgccacgctgcacaaccaggacgtggtcagggccaagggcgtc
ctcatcggtgacacggtggtgctgcgcaaggccggcgacgtgattccggagatcctcggg
ccggtcgccgacctgcgggacggcagcgagcgggagttcgtgatgccggccgagtgcccc
gagtgcggcacgccgctgaagcccatgaaggagggcgacgtggacctgcgttgccccaac
gcccgctcgtgcccggcccagttgcgggagcggctgttctacctcgccgggcgcaaggcg
ctggacatcgagcacttcggctatgtcgccgcggcggcgctgacccggccgctggagccc
gcggacccgccgctcacgaacgagggcgatctcttcgacctcaccgtcgaacagctgctg
cccatcaaggcgtacgtcctcgaccaggacagcgggctgcccaaacgggacccgaagacc
ggcgaggagaaggtcgccaccgtcttcgccaaccaggagggtgagccgaggaagaacgcg
gtcgcgatgctggccaacatcgacgcggccaaggagcgtccgctggcccgtgtgctgacc
ggcctgtcgatccgtcacgtggggccggtcgcggcggaggcgctggcccgtgagttcggc
tccgtcgaccgcatcgagcaggccaccgaggaggagctggcgaacaccgagggggtcggg
ccgatcatcgccgcctcgctcaagcagtggttcgccgaggactggcaccgcgagatcatc
cgcaagtggaaggcggccggtgtccgcatggaggacgagggcgccggcgaggaccagggc
ccgcgtccgctgcaagggctcactgtcgtcgtgaccggaactctggacggttacacccgg
gatggcgcgaaagaggcgctgcagagccagggagcgaaggtgaccggatccgtctccaag
aagacttcgttcgtcgtggtgggagacaatcccgggtcaaaatatgacaaggcgatgcag
ttgaaagtgccggttctgaacgaagcgggcttcacggtccttctcgagcggggtccggag
gccgcggccgacctcgccctttcggccgaggagtag
DBGET
integrated database retrieval system
