Schizosaccharomyces osmophilus (fission yeast): SOMG_03823
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Entry
SOMG_03823 CDS
T09274
Symbol
caf16
Name
(RefSeq) CCR4-Not complex ATPase subunit Caf16
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOMG_03823 (caf16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
som03019
]
SOMG_03823 (caf16)
Messenger RNA biogenesis [BR:
som03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
SOMG_03823 (caf16)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_25
AAA_29
Zeta_toxin
SMC_N
RsgA_GTPase
AAA_23
SRP54
AAA_15
MMR_HSR1
AAA_22
AAA_16
AAA_28
FtsK_SpoIIIE
ORC-CDC6-like
AAA
ATP-synt_ab
DUF3584
CLP1_P
Motif
Other DBs
NCBI-GeneID:
80877299
NCBI-ProteinID:
XP_056038765
UniProt:
A0AAF0AX79
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All DBs
Position
2:complement(join(2938102..2938700,2938794..2938913,2939008..2939134))
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AA seq
281 aa
AA seq
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MDLIEVSNLSYTFSPEFPLSLDHVSINLPRGSRTLLVGANGAGKSTLLRLLAGKSLAKAG
NVSVFGNDPFRESKSTVVHLGTEWVNNPVVHRDMIVARLIASVGGDVFPERRDMLISILD
IDLRWRMHAISDGERRRVQLCMGLLRPFDLLLLDEVTVDLDVLARSDLLSFLSSETETRK
ATIVYATHIFDGLAKWPTHLVHMSQGKIVDSGPVSNFPEIQSVTNTGNSALLETCLTWIK
EDIKVRGSRENEKRSTWQDVQDTFKTGTDVFTDYFKISRAR
NT seq
846 nt
NT seq
+upstream
nt +downstream
nt
atggatcttattgaagtctccaatctttcctacacattttcaccagaatttccattgagc
cttgatcatgtatcaataaatcttcctcgaggatctaggacactgcttgttggtgcgaat
ggtgccggtaaatcaactttattgcgtcttttagctggaaagtctctagcaaaggccgga
aatgtgtcagtatttggcaatgatccttttcgagaatccaaaagtactgttgtgcatctc
ggaacagaatgggtcaataatccagtcgttcaccgagatatgatagttgctcgactcatt
gcatctgtcggtggtgatgtatttcctgaacgccgcgatatgctgatttccatcctagac
attgatcttcgatggagaatgcatgcaatatccgatggtgaacgacgtcgtgtccagctt
tgcatgggacttttaagaccgttcgacctccttttgttggatgaagttactgttgatctc
gacgtacttgctcgttctgatcttctgtcattcctttcctcagaaactgaaacgagaaag
gcaaccattgtttacgccacccatatttttgatggtttagccaagtggcctacacatttg
gtacacatgtctcaaggaaagatcgtcgattcaggcccagtatcaaactttccagaaatc
caatctgttaccaatacgggaaacagcgccttgttagagacgtgtttgacttggataaaa
gaggatatcaaggtccgtggatctcgtgaaaacgaaaagcgcagcacctggcaagatgta
caggatactttcaaaacaggcacagacgtttttactgattattttaaaatctctcgtgca
agatga
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